{"id":"W4200421804","doi":"10.2196/33746","title":"Multiplex Droplet Digital Polymerase Chain Reaction Assay for Rapid Molecular Detection of Pathogens in Patients With Sepsis: Protocol for an Assay Development Study","year":2021,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Polymerase chain reaction; Digital polymerase chain reaction; Protocol (science); Multiplex polymerase chain reaction; Multiplex; Sepsis; Computational biology; Medicine; Biology; Microbiology; Bioinformatics; Immunology; Gene; Genetics; Pathology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01760168,0.003811719,0.002343956,0.002965261,0.001987146,0.001336956,0.003219649,0.002767481,0.03276721],"category_scores_gemma":[0.01081759,0.002603683,0.001686081,0.00186112,0.001578818,0.001295481,0.001978281,0.002483901,0.01922041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001487064,"about_ca_system_score_gemma":0.005755284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005104121,"about_ca_topic_score_gemma":0.0009110008,"domain_scores_codex":[0.9837129,0.007111019,0.002369272,0.001990962,0.003896636,0.000919154],"domain_scores_gemma":[0.992038,0.001701077,0.0006833972,0.001599063,0.003523389,0.0004549879],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.008141147,0.007114408,0.00581153,0.007779183,0.0002975609,0.001516615,0.001270521,0.00460201,0.7202982,0.01146361,0.0566328,0.1750725],"study_design_scores_gemma":[0.005528138,0.02894139,0.01266769,0.00249206,0.0003999706,0.003578743,0.0004150759,0.02016197,0.4851311,0.005399565,0.4345704,0.0007138789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.02858034,0.002419504,0.6637911,0.0008577425,0.00172345,0.274954,0.007706796,0.005077306,0.01488974],"genre_scores_gemma":[0.02125808,0.001280248,0.5869032,0.0009796944,0.0002233891,0.3687248,0.009628464,0.000361941,0.01064022],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.03276721,"threshold_uncertainty_score":0.1096172,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.122128216640976,"score_gpt":0.4519420394486979,"score_spread":0.3298138228077219,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}