{"id":"W4200456383","doi":"10.3389/fvets.2021.782409","title":"Comparative Enhancer Map of Cattle Muscle Genome Annotated by ATAC-Seq","year":2021,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China; McGill University","keywords":"Enhancer; Biology; Genome-wide association study; Genetics; Promoter; Genome; Gene; Computational biology; Transcription factor; Gene expression; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004063968,0.000434234,0.0006922088,0.002166144,0.0007623935,0.0004103442,0.0004205461,0.0004228975,0.005072884],"category_scores_gemma":[0.0005413461,0.0002882402,0.0008981426,0.002368713,0.000188178,0.0001992903,0.0005614554,0.0006405285,0.001694006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003885472,"about_ca_system_score_gemma":0.0007676917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008066317,"about_ca_topic_score_gemma":0.01645353,"domain_scores_codex":[0.9995174,0.00003836483,0.0000200705,0.0002439146,0.0001083319,0.00007192953],"domain_scores_gemma":[0.9996367,0.0001175959,0.00007738749,0.00002458303,0.00008863352,0.00005520885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001824707,0.0001681946,0.09038325,0.003556349,0.0005534402,0.001646935,0.001888593,0.004306215,0.7888886,0.003219977,0.01788564,0.08567813],"study_design_scores_gemma":[0.0003757903,0.0003910623,0.7365847,0.0004326669,0.001091108,0.002385554,0.0007388323,0.02034863,0.07197821,0.0022305,0.1633088,0.0001341723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.687071,0.008325892,0.0443189,0.0003189865,0.0001416804,0.0001964801,0.2462504,0.002223004,0.01115379],"genre_scores_gemma":[0.5310663,0.002238387,0.0734385,0.0008561767,0.00009909528,0.0006350326,0.3823601,0.0009118457,0.008394642],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008066317,"threshold_uncertainty_score":0.01697052,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01549544022638369,"score_gpt":0.2673053390521559,"score_spread":0.2518098988257722,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}