{"id":"W4200456383","doi":"10.3389/fvets.2021.782409","title":"Comparative Enhancer Map of Cattle Muscle Genome Annotated by ATAC-Seq","year":2021,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China; McGill University","keywords":"Enhancer; Biology; Genome-wide association study; Genetics; Promoter; Genome; Gene; Computational biology; Transcription factor; Gene expression; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001445587,0.0001101667,0.000167505,0.00005921994,0.00006583899,0.00001345524,0.0003526086,0.00005752847,0.00003911165],"category_scores_gemma":[0.00001944935,0.0001154854,0.00003072153,0.0003191959,0.0005981621,0.00001055361,0.0001725352,0.00006755045,0.000005288033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002213791,"about_ca_system_score_gemma":0.0002472429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007216453,"about_ca_topic_score_gemma":0.000001748152,"domain_scores_codex":[0.9989395,0.00005214785,0.0001824176,0.0004121168,0.0001576273,0.0002561729],"domain_scores_gemma":[0.9994447,0.000005388929,0.00006261961,0.0003217751,0.00009611192,0.00006939848],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003849531,0.00008296832,0.0007868047,0.00001502838,0.000009579185,0.000002261426,0.0003708066,0.000499061,0.9933605,0.0000406133,0.004170657,0.000623219],"study_design_scores_gemma":[0.0007958814,0.001875842,0.3069598,0.00003378118,0.00001152481,0.00003033033,0.001549191,0.0001543919,0.6106718,0.0006373093,0.07679749,0.000482676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9795867,0.003017995,0.01525093,0.00004199597,0.000635312,0.0000967337,0.00006307111,0.000004452167,0.00130286],"genre_scores_gemma":[0.945352,0.00003876525,0.05290677,0.00005713804,0.00003143813,0.00000800835,0.00006048849,0.000006195751,0.001539263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3826887,"threshold_uncertainty_score":0.4709359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01549544022638369,"score_gpt":0.2673053390521559,"score_spread":0.2518098988257722,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}