{"id":"W4200460492","doi":"10.1111/mmi.14871","title":"Genomic and phenotypic analysis of SspH1 identifies a new <i>Salmonella</i> effector, SspH3","year":2021,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Health Canada; Université Laval; Dalhousie University","funders":"Genome Canada","keywords":"Biology; Effector; Virulence; Salmonella; Pathogenicity island; Genetics; Gene; Genome; Type three secretion system; Phenotype; Cell biology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001251945,0.0003407325,0.0002382851,0.0002487115,0.0001409905,0.0002977086,0.0001917938,0.0003134969,0.001208565],"category_scores_gemma":[0.0002608447,0.000100816,0.0005617324,0.0002758022,0.0002353637,0.0001246599,0.0002844702,0.0006227722,0.0007436458],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002775547,"about_ca_system_score_gemma":0.0002753665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001175391,"about_ca_topic_score_gemma":0.00115651,"domain_scores_codex":[0.999903,0.00001001733,0.000008137975,0.00002091497,0.00003628093,0.00002178388],"domain_scores_gemma":[0.9997553,0.0000623096,0.00006119301,0.00002679598,0.00003400175,0.00006041172],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001660424,0.00005891774,0.002336554,0.00003529272,0.000008297317,0.000187517,0.00002321127,0.0001248821,0.9949594,0.00007321495,0.00008972023,0.001936969],"study_design_scores_gemma":[0.00003181282,0.0005962235,0.1257506,0.00002638178,0.00005769756,0.002831089,0.0002784029,0.003528562,0.859584,0.0002614139,0.007025056,0.00002873408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897142,0.0003896001,0.004253658,0.0001619821,0.00002597541,0.00004470918,0.004159738,0.0001044659,0.001145695],"genre_scores_gemma":[0.9819676,0.0002345328,0.00478729,0.0001374759,0.000009492467,0.00002396283,0.01055479,0.00007219143,0.002212765],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001208565,"threshold_uncertainty_score":0.004043102,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009815799058428807,"score_gpt":0.2112533246537674,"score_spread":0.2014375255953386,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}