{"id":"W4200460492","doi":"10.1111/mmi.14871","title":"Genomic and phenotypic analysis of SspH1 identifies a new <i>Salmonella</i> effector, SspH3","year":2021,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Health Canada; Université Laval; Dalhousie University","funders":"Genome Canada","keywords":"Biology; Effector; Virulence; Salmonella; Pathogenicity island; Genetics; Gene; Genome; Type three secretion system; Phenotype; Cell biology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000188188,0.0001887034,0.0006218182,0.00004051696,0.00005970902,0.0000177086,0.0001992577,0.0002126002,0.000437407],"category_scores_gemma":[0.00006805309,0.00009231803,0.000275054,0.0006549163,0.0001417974,0.00002222823,0.0001918125,0.0001082309,0.00002980347],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001479713,"about_ca_system_score_gemma":0.00001802558,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000721823,"about_ca_topic_score_gemma":0.0007304662,"domain_scores_codex":[0.9984146,0.0003479506,0.0003519867,0.0005169563,0.00003767883,0.0003308542],"domain_scores_gemma":[0.9992656,0.0002864585,0.0001431025,0.0001361256,0.00006752706,0.0001012347],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002361648,0.000031884,0.03142827,0.000007741033,0.0005026173,0.00002953982,0.00004765963,0.0000141506,0.9624274,0.0001527458,0.0002687743,0.005065536],"study_design_scores_gemma":[0.0003762207,0.0002137398,0.4489008,0.00001332163,0.001076231,0.0001382143,0.0001252413,0.00003551657,0.5301696,0.001061659,0.01746465,0.0004248008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922791,0.006558888,0.00008366154,0.0005488986,0.0001261626,0.00009152625,0.00007116167,0.00002858077,0.0002120413],"genre_scores_gemma":[0.997778,0.0001783579,0.0001570357,0.0009292035,0.00005335405,0.00000399205,0.0004657172,0.000001896316,0.0004324203],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4322579,"threshold_uncertainty_score":0.47893,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009815799058428807,"score_gpt":0.2112533246537674,"score_spread":0.2014375255953386,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}