{"id":"W4200479594","doi":"10.3389/fimmu.2021.760931","title":"Regionally Distinct Immune and Metabolic Transcriptional Responses in the Bovine Small Intestine and Draining Lymph Nodes During a Subclinical Mycobacterium avium subsp. paratuberculosis Infection","year":2021,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Paratuberculosis; Lymph; Subclinical infection; Immune system; Mesenteric lymph nodes; Microbiology; Small intestine; Mycobacterium; Immunology; Biology; Medicine; Virology; Pathology; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001627319,0.0001695231,0.0003613891,0.0005733794,0.0002914465,0.0005721115,0.0001177117,0.0002676394,0.0005932075],"category_scores_gemma":[0.0002117656,0.000154491,0.0002178959,0.0004309844,0.0002615611,0.0002048379,0.0002992498,0.0003274647,0.0001891627],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003064081,"about_ca_system_score_gemma":0.0001878528,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002034747,"about_ca_topic_score_gemma":0.003273667,"domain_scores_codex":[0.9997883,0.0000197685,0.00001054959,0.00007039958,0.00003798062,0.00007290677],"domain_scores_gemma":[0.9998531,0.00002579122,0.00004283467,0.000006784432,0.00002810278,0.0000433951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007425274,0.00004437207,0.03510332,0.0001341427,0.00002512879,0.0001255895,0.0004733098,0.00008180488,0.9603107,0.00004756684,0.00008405986,0.002827384],"study_design_scores_gemma":[0.0000162876,0.0003683099,0.9729384,0.00003027796,0.00005835155,0.0003290905,0.001215208,0.000655106,0.02309286,0.00009834057,0.001184704,0.00001309523],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981345,0.0006218159,0.0002294399,0.00002383265,0.000004647122,0.000006961176,0.0005897825,0.000008269297,0.0003807227],"genre_scores_gemma":[0.9968289,0.0003769512,0.0005227563,0.00009085772,0.000007196123,0.00003164743,0.001336548,0.000007005594,0.0007980426],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002034747,"threshold_uncertainty_score":0.004045784,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02480803102363471,"score_gpt":0.2773326297871291,"score_spread":0.2525245987634944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}