{"id":"W4200506814","doi":"10.1021/acs.jcim.1c01240","title":"Supramolecular Organization of SARS-CoV and SARS-CoV-2 Virions Revealed by Coarse-Grained Models of Intact Virus Envelopes","year":2021,"lang":"en","type":"article","venue":"Journal of Chemical Information and Modeling","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Central University Basic Research Fund of China; National Natural Science Foundation of China; Government of Canada","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Virology; Virus; Lipid bilayer fusion; Biology; Coronavirus disease 2019 (COVID-19); Computational biology; Pandemic; Severe acute respiratory syndrome coronavirus; Sars virus; Biophysics; Chemistry; Medicine; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000127799,0.00008282112,0.0001944957,0.00005498573,0.0000357078,0.0000363689,0.00006473559,0.00006190935,0.00002995637],"category_scores_gemma":[0.00008849995,0.00007562013,0.00004592096,0.0001465849,0.00005243595,0.001126473,0.00007889545,0.0001289291,0.000001697336],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003872961,"about_ca_system_score_gemma":0.00002625367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008388476,"about_ca_topic_score_gemma":0.000004951227,"domain_scores_codex":[0.9990856,0.00001817044,0.0006181296,0.00006043116,0.0001343701,0.00008329575],"domain_scores_gemma":[0.9993909,0.00001759413,0.0003384824,0.00006622142,0.0001505027,0.0000363027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001918429,0.00003457669,0.00002262319,0.00002222664,0.00001738754,5.604173e-7,0.0007560232,0.001223681,0.9962084,0.00003196102,0.000519419,0.001143963],"study_design_scores_gemma":[0.0003597277,0.00001950537,0.00001566222,0.00005630914,0.00002824374,0.0000791056,0.0001375265,0.07026318,0.9281849,0.000132032,0.0006527691,0.00007098946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9350888,0.00004840855,0.0643498,0.0002036827,0.0000308319,0.00004502573,0.00001786464,0.000003806384,0.0002118123],"genre_scores_gemma":[0.9947304,0.0003250434,0.004500332,0.0003992941,0.000007746243,4.015405e-7,0.00002574157,0.000005548814,0.000005471375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0690395,"threshold_uncertainty_score":0.30837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02157747070184341,"score_gpt":0.2616368930652963,"score_spread":0.2400594223634529,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}