{"id":"W4200543445","doi":"10.3791/3344-v","title":"Multiplex Detection of Bacteria in Complex Clinical and Environmental Samples using Oligonucleotide-coupled Fluorescent Microspheres","year":2011,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Plant Biotechnology Institute; University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"","keywords":"Bacterial vaginosis; Gardnerella vaginalis; Multiplex; Biology; Gram staining; Lactobacillus; Oligonucleotide; Computational biology; Metagenomics; DNA sequencing; Microbiology; Bioinformatics; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001609524,0.001295012,0.001119364,0.001634183,0.0003917071,0.001138291,0.0008524181,0.001903629,0.001029488],"category_scores_gemma":[0.001745871,0.0006146901,0.0006316927,0.0007943511,0.0006309226,0.0007593376,0.001435144,0.001189484,0.0009062173],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006621059,"about_ca_system_score_gemma":0.0004515787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004492045,"about_ca_topic_score_gemma":0.0008717095,"domain_scores_codex":[0.9975951,0.0004327296,0.0001086143,0.0008188832,0.0008342905,0.0002104277],"domain_scores_gemma":[0.9992025,0.0002870063,0.0001864452,0.00004969531,0.0001757608,0.00009859633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003025667,0.0001402486,0.002482401,0.0003393033,0.00009126156,0.0001416538,0.0001338278,0.001081418,0.972214,0.0004928448,0.0008117502,0.02176864],"study_design_scores_gemma":[0.00008086875,0.00149273,0.01192259,0.0001011697,0.000156664,0.0008706514,0.0001402323,0.05034112,0.9229656,0.001075887,0.01068568,0.0001668099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4140172,0.01384189,0.5563996,0.0008901785,0.0007488735,0.001116326,0.003915988,0.004714902,0.004355009],"genre_scores_gemma":[0.4253412,0.004365002,0.5607389,0.00124992,0.0002865589,0.001746675,0.002491378,0.0001695288,0.003610871],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.001903629,"threshold_uncertainty_score":0.00851208,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1366943139687543,"score_gpt":0.4412777617101153,"score_spread":0.304583447741361,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}