{"id":"W4200549028","doi":"10.1371/journal.pntd.0010029","title":"Deep resequencing identifies candidate functional genes in leprosy GWAS loci","year":2021,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Leprosy Research and Treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Compute Canada","keywords":"Genome-wide association study; Genetics; Candidate gene; Biology; Locus (genetics); Nonsynonymous substitution; Leprosy; Genetic association; Gene; Haplotype; Allele; Single-nucleotide polymorphism; Genome; Genotype; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000555896,0.0003396066,0.0004943016,0.000598416,0.0003619594,0.0004580664,0.0002492199,0.0004034473,0.001828008],"category_scores_gemma":[0.001133879,0.000199901,0.0004855623,0.0005315056,0.0002358523,0.0000907264,0.0003744121,0.0004223076,0.0002920979],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002505916,"about_ca_system_score_gemma":0.0002168751,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002751299,"about_ca_topic_score_gemma":0.005475976,"domain_scores_codex":[0.9996766,0.00005262386,0.00002673307,0.0001346363,0.00006013709,0.00004925549],"domain_scores_gemma":[0.9995601,0.0001929315,0.0001050865,0.00004242619,0.00004458251,0.00005493688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001924097,0.0001627175,0.4331913,0.0006185376,0.001282307,0.007131995,0.0009609305,0.003547986,0.5134442,0.0010543,0.002872428,0.03380922],"study_design_scores_gemma":[0.0002591012,0.0004168073,0.9345524,0.00009561399,0.0007009817,0.005072731,0.000404797,0.01375385,0.03263511,0.001374798,0.01068393,0.00004986037],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919307,0.0009792777,0.003492301,0.0001373865,0.00002492658,0.00002993656,0.002810713,0.00007504025,0.0005197136],"genre_scores_gemma":[0.9933544,0.0002201729,0.002651477,0.0001913778,0.00001509736,0.00002346628,0.002856741,0.00004095066,0.0006464418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002751299,"threshold_uncertainty_score":0.006115317,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02866689969850761,"score_gpt":0.2801114167166159,"score_spread":0.2514445170181083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}