{"id":"W4200549028","doi":"10.1371/journal.pntd.0010029","title":"Deep resequencing identifies candidate functional genes in leprosy GWAS loci","year":2021,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Leprosy Research and Treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Compute Canada","keywords":"Genome-wide association study; Genetics; Candidate gene; Biology; Locus (genetics); Nonsynonymous substitution; Leprosy; Genetic association; Gene; Haplotype; Allele; Single-nucleotide polymorphism; Genome; Genotype; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000003897319,0.0001865774,0.0003357556,0.0001507296,0.0001293391,0.00007955959,0.00007002729,0.00007649298,0.001268335],"category_scores_gemma":[0.0008721089,0.0001524045,0.0001406009,0.0005548605,0.0001138838,0.0001268868,0.00008803387,0.0002407443,0.0001424205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003015354,"about_ca_system_score_gemma":0.0006162605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001457348,"about_ca_topic_score_gemma":0.0006577543,"domain_scores_codex":[0.9979525,0.000132733,0.0002793609,0.0005038762,0.0006265932,0.0005049778],"domain_scores_gemma":[0.9987643,0.0001365527,0.0000324175,0.0003543124,0.0002714594,0.0004409656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001316925,0.002571806,0.7019856,0.0003733143,0.0005188287,0.006526452,0.00008544866,0.00005515921,0.2825391,0.0003206315,0.001024248,0.002682523],"study_design_scores_gemma":[0.002426009,0.0001819709,0.9663956,0.0001365393,0.000180317,0.00005339019,0.0000735365,0.0006646724,0.02880725,0.0007655206,0.0001740696,0.0001411419],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904359,0.007072072,0.0001261389,0.001405465,0.00006626531,0.0003529883,0.00004371149,0.0001155164,0.0003819485],"genre_scores_gemma":[0.9972818,0.0004165233,0.0001674995,0.0002334767,0.0002390457,0.0001659912,0.0005413871,0.00002590462,0.0009283013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.26441,"threshold_uncertainty_score":0.9996446,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02866689969850761,"score_gpt":0.2801114167166159,"score_spread":0.2514445170181083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}