{"id":"W4205152603","doi":"10.1128/mra.01181-21","title":"Genome Sequence of the Early 20th-Century Extreme Halophile <i>Halobacterium</i> sp. Strain NRC-34001","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Aeronautics and Space Administration","keywords":"Halophile; Plasmid; Whole genome sequencing; Genome; Biology; Halobacterium; Genetics; Strain (injury); Proteome; Chromosome; Gene; Circular bacterial chromosome; Halobacteriaceae; Computational biology; Archaea; Halobacterium salinarum; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000145923,0.0005809629,0.000610645,0.001576597,0.0008416609,0.0004894627,0.0004492638,0.0005179054,0.003042396],"category_scores_gemma":[0.0004318801,0.0002472576,0.0005026179,0.003219363,0.000185436,0.0001627339,0.0002928843,0.0007054926,0.002627478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001378139,"about_ca_system_score_gemma":0.003050782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.134485,"about_ca_topic_score_gemma":0.1079217,"domain_scores_codex":[0.9998993,0.000005371471,0.000008857866,0.00003051859,0.00003612884,0.00001984179],"domain_scores_gemma":[0.9996791,0.00004160273,0.00004539012,0.00001763061,0.0001448172,0.00007145799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002218953,0.000151986,0.01540954,0.00176019,0.0001628803,0.001248426,0.001063811,0.001376826,0.9027901,0.001141697,0.01734254,0.05533316],"study_design_scores_gemma":[0.0001922638,0.000402941,0.6403703,0.0004575457,0.0005573463,0.001780577,0.0009040684,0.001496913,0.05461864,0.0006532031,0.2984182,0.0001479794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.41763,0.006830188,0.007021546,0.0009576515,0.0002463676,0.0002031678,0.5512613,0.0006272123,0.01522269],"genre_scores_gemma":[0.1845578,0.00439582,0.01287887,0.0003391464,0.00005212634,0.0001480901,0.7857007,0.0001751328,0.01175238],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.134485,"threshold_uncertainty_score":0.2674044,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01874543318635806,"score_gpt":0.213123959442047,"score_spread":0.194378526255689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}