{"id":"W4205152603","doi":"10.1128/mra.01181-21","title":"Genome Sequence of the Early 20th-Century Extreme Halophile <i>Halobacterium</i> sp. Strain NRC-34001","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Aeronautics and Space Administration","keywords":"Halophile; Plasmid; Whole genome sequencing; Genome; Biology; Halobacterium; Genetics; Strain (injury); Proteome; Chromosome; Gene; Circular bacterial chromosome; Halobacteriaceae; Computational biology; Archaea; Halobacterium salinarum; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003563558,0.0002395871,0.0002448244,0.00003918244,0.0003870645,0.00001250465,0.0007717135,0.000105266,0.0001263471],"category_scores_gemma":[0.00002210414,0.0002048186,0.0002005865,0.0001602865,0.0003118356,0.000001134501,0.001118953,0.0001850413,0.000008994065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006367158,"about_ca_system_score_gemma":0.0001050092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003755865,"about_ca_topic_score_gemma":0.00001412564,"domain_scores_codex":[0.998328,0.0002254181,0.0003606934,0.0005037285,0.000137761,0.000444411],"domain_scores_gemma":[0.9989736,0.00001056628,0.0002346396,0.0006237915,0.0001086367,0.00004875205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008724316,0.00009430226,0.01484356,0.000009753278,0.0001751349,0.000002944513,0.0002394999,0.0001291845,0.9826048,0.00001145072,0.001579252,0.0002228731],"study_design_scores_gemma":[0.0005981093,0.0004071061,0.008092749,0.000005413545,0.00003361893,0.00005848827,0.0002753636,9.566061e-7,0.007592703,0.00002161744,0.9826781,0.000235811],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9855825,0.002843481,0.000007381764,0.000233963,0.0003952125,0.0003597977,0.009484831,0.000004810852,0.001087988],"genre_scores_gemma":[0.9946675,0.0002020903,0.00007760688,0.001016274,0.000129093,0.00006361977,0.002036799,0.00002861542,0.001778374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9810988,"threshold_uncertainty_score":0.8352259,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01874543318635806,"score_gpt":0.213123959442047,"score_spread":0.194378526255689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}