{"id":"W4205167667","doi":"10.1101/2022.01.19.476882","title":"Extended bacterial diversity of the urinary microbiome of reproductive-age healthy European women captured by culturomics and long-read amplicon sequencing","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Directorate for Biological Sciences; Rede de Química e Tecnologia; Joint Programming Initiative on Antimicrobial Resistance; Universidade do Porto; Applied Molecular Biosciences Unit; Ministério da Ciência, Tecnologia e Ensino Superior; Fundação para a Ciência e a Tecnologia; International Development Research Centre","keywords":"Biology; Microbiome; Lactobacillus crispatus; Lactobacillus; Amplicon; Gardnerella vaginalis; Zoology; Metagenomics; Microbiology; Genetics; Polymerase chain reaction; Bacteria; Gene; Bacterial vaginosis","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005076649,0.000375883,0.0004929549,0.0009404903,0.0003037833,0.0006348768,0.0002054862,0.000450614,0.0009566539],"category_scores_gemma":[0.001019885,0.0001748725,0.000366023,0.0008827443,0.0002380544,0.0002266787,0.0007227992,0.0001712798,0.000254541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001102216,"about_ca_system_score_gemma":0.000120245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001581112,"about_ca_topic_score_gemma":0.002022925,"domain_scores_codex":[0.9995658,0.0001167864,0.00003469686,0.0001379733,0.00008704326,0.00005779119],"domain_scores_gemma":[0.9996523,0.00006476769,0.0001058691,0.00003019432,0.000100148,0.00004679122],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008289717,0.00008336997,0.8234717,0.000245755,0.0002455519,0.0006892923,0.001488984,0.0002637872,0.1405231,0.00007548503,0.0005311375,0.03155292],"study_design_scores_gemma":[0.000007037094,0.0003045065,0.9892642,0.00005378442,0.00008870124,0.0009328496,0.0008620165,0.0006685698,0.005955912,0.00006639463,0.001776558,0.00001934241],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959007,0.0008263375,0.001125286,0.00004060183,0.000009384209,0.00002454365,0.001687034,0.00001647398,0.0003696237],"genre_scores_gemma":[0.9951291,0.0003456265,0.002267194,0.0001081092,0.00002179732,0.00003685592,0.001665194,0.00001144581,0.0004145829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001581112,"threshold_uncertainty_score":0.003200352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01849130047198533,"score_gpt":0.2246503032513796,"score_spread":0.2061590027793943,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}