{"id":"W4205186833","doi":"10.17504/protocols.io.bumjnu4n","title":"SARS-CoV2 GISAID submission protocol v2","year":2021,"lang":"en","type":"preprint","venue":"","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Protocol (science); Computer science; Biology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01511725,0.001174278,0.001379743,0.002901945,0.002344379,0.005209207,0.003371292,0.002601753,0.2527099],"category_scores_gemma":[0.03385635,0.001899917,0.0009609533,0.002509401,0.0009138205,0.002782568,0.006350155,0.002952174,0.2586304],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001449969,"about_ca_system_score_gemma":0.005972752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004386516,"about_ca_topic_score_gemma":0.003601749,"domain_scores_codex":[0.9860625,0.005224434,0.0022819,0.001152865,0.004014676,0.001263592],"domain_scores_gemma":[0.9810221,0.004357071,0.001107952,0.005780569,0.006561543,0.001170821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009258991,0.00007204962,0.000615962,0.0007856287,0.00004872152,0.0001746771,0.0003432271,0.0001880229,0.008679563,0.004388715,0.9653811,0.01839649],"study_design_scores_gemma":[0.0001653692,0.00007493202,0.0009035075,0.0002086632,0.00001910184,0.0001851734,0.0001915937,0.0003342847,0.009800231,0.002845676,0.9852082,0.00006338653],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"protocol","genre_scores_codex":[0.008129059,0.001624237,0.1456665,0.008427924,0.00390789,0.01786964,0.6248789,0.09122421,0.09827156],"genre_scores_gemma":[0.01707244,0.001260211,0.08531901,0.004465099,0.0007509303,0.02486363,0.7537807,0.02602278,0.08646514],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.2527099,"threshold_uncertainty_score":0.8453989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08583132913686078,"score_gpt":0.3831728208386371,"score_spread":0.2973414917017764,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}