{"id":"W4205206565","doi":"10.3390/microorganisms10010189","title":"Comparative Genomics of Typical and Atypical Aeromonas salmonicida Complete Genomes Revealed New Insights into Pathogenesis Evolution","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Canada First Research Excellence Fund; Ocean Frontier Institute","keywords":"Aeromonas salmonicida; Biology; Virulence; Genome; Comparative genomics; Genetics; Gene; Genomics; Microbiology; Plasmid; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001066644,0.0002464141,0.0004821744,0.0001227964,0.0004553081,0.00001430112,0.0003141658,0.0001257421,0.0008814297],"category_scores_gemma":[0.000008159807,0.0002373292,0.0001069055,0.0002194986,0.0002493356,0.0000539651,0.0005952488,0.0002547103,0.0001663551],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002277527,"about_ca_system_score_gemma":0.0001150557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007118769,"about_ca_topic_score_gemma":0.00005852962,"domain_scores_codex":[0.9985775,0.0002637198,0.0003847538,0.000436168,0.00004968364,0.0002881447],"domain_scores_gemma":[0.9993903,0.00005011832,0.0001798449,0.0002744978,0.00005148324,0.00005372563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008129313,0.0001578518,0.001080382,0.00002228705,0.0002314587,0.000006943184,0.004001188,0.000009437525,0.9840285,0.002340573,0.006982528,0.0003258938],"study_design_scores_gemma":[0.006008781,0.001193863,0.211561,0.00003204782,0.0006779201,0.0001848018,0.007336078,0.00001604471,0.3931124,0.003955974,0.3747431,0.001177962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9774638,0.02064308,0.000757003,0.0002122306,0.000251472,0.0004298836,0.00009032933,0.00005346413,0.00009870763],"genre_scores_gemma":[0.9969161,0.00007220394,0.000799789,0.000199315,0.00003305822,0.00001406536,0.0004952795,0.00002369435,0.001446507],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5909162,"threshold_uncertainty_score":0.9678005,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01460710517557673,"score_gpt":0.2211173132604289,"score_spread":0.2065102080848522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}