{"id":"W4205206565","doi":"10.3390/microorganisms10010189","title":"Comparative Genomics of Typical and Atypical Aeromonas salmonicida Complete Genomes Revealed New Insights into Pathogenesis Evolution","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Canada First Research Excellence Fund; Ocean Frontier Institute","keywords":"Aeromonas salmonicida; Biology; Virulence; Genome; Comparative genomics; Genetics; Gene; Genomics; Microbiology; Plasmid; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003546686,0.0005356337,0.0005304549,0.0008318705,0.0003624933,0.0005958661,0.0002772273,0.000481585,0.0009119136],"category_scores_gemma":[0.0004876207,0.0002443609,0.0008069871,0.001247664,0.0001975202,0.0005662663,0.0005897915,0.0007959843,0.0004188418],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004131739,"about_ca_system_score_gemma":0.0004487102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00179159,"about_ca_topic_score_gemma":0.002190346,"domain_scores_codex":[0.9996914,0.0000335618,0.00002548061,0.0001322071,0.00006373055,0.00005360359],"domain_scores_gemma":[0.9997388,0.00004613352,0.00007132106,0.00002447522,0.00007195897,0.00004737587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005762925,0.00008895765,0.02232497,0.001031113,0.0001889151,0.0006751757,0.0006129917,0.001221701,0.9340277,0.0007878607,0.001345734,0.03711855],"study_design_scores_gemma":[0.00009099783,0.0008933471,0.8052096,0.0004165969,0.0007745873,0.002986119,0.001455372,0.01422412,0.08686338,0.002556473,0.08434267,0.0001867259],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9570022,0.01097385,0.01244895,0.0004017817,0.0001046255,0.00005578641,0.01584115,0.0003243792,0.00284717],"genre_scores_gemma":[0.9056654,0.00718693,0.02480795,0.0004209279,0.00006817725,0.0001164567,0.05848332,0.0002748891,0.002975957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00179159,"threshold_uncertainty_score":0.003562331,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01460710517557673,"score_gpt":0.2211173132604289,"score_spread":0.2065102080848522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}