{"id":"W4205246644","doi":"10.1177/117693430600200029","title":"Modelling Prokaryote Gene Content","year":2006,"lang":"en","type":"article","venue":"Evolutionary Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Dalhousie University; Genome Canada","keywords":"Gene; Prokaryote; Biology; Genome; Horizontal gene transfer; Archaea; Phylogenetic tree; Computational biology; Genetics; Bacillus subtilis; Evolutionary biology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000954693,0.0005138612,0.000744214,0.001500209,0.0005501431,0.001886657,0.00138404,0.001719626,0.002809307],"category_scores_gemma":[0.008887007,0.0004500343,0.0009512501,0.001793958,0.001033636,0.001922655,0.00112909,0.000832891,0.0006094109],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002436686,"about_ca_system_score_gemma":0.0006905704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01073497,"about_ca_topic_score_gemma":0.005639836,"domain_scores_codex":[0.9994779,0.0001570897,0.0000210755,0.0001703623,0.00008851209,0.00008506322],"domain_scores_gemma":[0.9970123,0.002231124,0.0002402952,0.0002025401,0.0001716477,0.0001421544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00007613411,0.00002302715,0.00799582,0.00005757651,0.00003540592,0.0001323006,0.0002461665,0.9461285,0.002235248,0.03707994,0.0003134493,0.005676429],"study_design_scores_gemma":[0.00001115954,0.00001827791,0.001335661,0.00001049794,0.00001330283,0.0000647064,0.00004977472,0.9666371,0.0005701334,0.0300203,0.001255552,0.00001358765],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7397085,0.00101938,0.2462596,0.0008418622,0.00004489606,0.00005671915,0.002316389,0.0004808179,0.009271747],"genre_scores_gemma":[0.965073,0.0005137911,0.02872074,0.00008390937,0.00001775725,0.000154779,0.001264189,0.0001610921,0.004010745],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01073497,"threshold_uncertainty_score":0.02134496,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01949874221566445,"score_gpt":0.2016384875055773,"score_spread":0.1821397452899128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}