{"id":"W4205319945","doi":"10.3389/fmicb.2021.756688","title":"Genetic Diversity of Listeria monocytogenes Isolated From Three Commercial Tree Fruit Packinghouses and Evidence of Persistent and Transient Contamination","year":2022,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Oak Ridge Institute for Science and Education; National Institute of Food and Agriculture; U.S. Food and Drug Administration; Hamilton Health Sciences Foundation; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Biology; Listeria monocytogenes; Contamination; Outbreak; Lineage (genetic); Veterinary medicine; Diversity index; Genetic diversity; Virulence; Genetics; Population; Ecology; Virology; Bacteria; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002792977,0.0003232941,0.000313944,0.00118592,0.0005860084,0.0008207561,0.0003364907,0.0003929871,0.0005261532],"category_scores_gemma":[0.000552879,0.0002539202,0.0003033139,0.001488499,0.0004784901,0.0002488521,0.0005357859,0.0002690776,0.0001429343],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004512566,"about_ca_system_score_gemma":0.000379078,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008095273,"about_ca_topic_score_gemma":0.009298515,"domain_scores_codex":[0.999581,0.00003201657,0.00003737234,0.0001446544,0.0001031028,0.0001017689],"domain_scores_gemma":[0.9992894,0.00014125,0.0002165491,0.00003420373,0.000125894,0.0001926915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005889565,0.0001846488,0.8133559,0.00005983267,0.00005145655,0.0007868694,0.002439694,0.0001720912,0.177948,0.00002853636,0.00006075138,0.00432324],"study_design_scores_gemma":[0.000003818011,0.0002174892,0.9954249,0.000004428337,0.00001515604,0.0002633861,0.0007453588,0.0001388572,0.003091718,0.000005670523,0.00008383548,0.000005524098],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998233,0.00001175919,0.00003667418,0.000001270153,3.120936e-7,0.000002614678,0.00008016606,0.000001031169,0.0000428864],"genre_scores_gemma":[0.9989941,0.00003132753,0.0002523927,0.000007405094,0.000001325527,0.000007497214,0.0005890931,0.000001882291,0.0001149904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008095273,"threshold_uncertainty_score":0.01609629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04713700300345864,"score_gpt":0.2641481586063075,"score_spread":0.2170111556028489,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}