{"id":"W4205461521","doi":"10.1093/hr/uhab047","title":"Transcriptomic and physiological analysis identifies a gene network module highly associated with brassinosteroid regulation in hybrid sweetgum tissues differing in the capability of somatic embryogenesis","year":2022,"lang":"en","type":"article","venue":"Horticulture Research","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Somatic embryogenesis; Brassinosteroid; Callus; Transcriptome; Auxin; Explant culture; Embryo; Botany; Gene; Cell biology; Somatic cell; Gene expression; Embryogenesis; Arabidopsis; Genetics; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008181137,0.0001038818,0.0002265338,0.00008159457,0.0001943748,0.00003240025,0.0001582561,0.00006694817,0.000007358773],"category_scores_gemma":[0.00006398967,0.00006307182,0.00005233039,0.0006406279,0.0001172116,0.000008357784,0.00007015306,0.0001797005,1.508071e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004252063,"about_ca_system_score_gemma":0.00003106808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002275595,"about_ca_topic_score_gemma":0.005331106,"domain_scores_codex":[0.9980606,0.0008170923,0.0002378357,0.0003041925,0.000338806,0.0002414137],"domain_scores_gemma":[0.9995991,0.00003993534,0.00006222716,0.000197756,0.00007407144,0.00002692164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008418618,0.0001332064,0.02922698,0.00002518101,0.0001272356,0.000008870624,0.0005822449,0.0116169,0.9578639,0.000007141938,0.0002456166,0.00007854401],"study_design_scores_gemma":[0.0003732897,0.0002616802,0.7871376,0.00001826814,0.0000825823,0.00001195485,0.0006093691,0.002282202,0.2089751,0.00005953397,0.00006412966,0.0001242736],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970253,0.002330918,0.00006860716,0.0001965791,0.00001519925,0.0003240708,0.00002324647,0.000004353634,0.00001179808],"genre_scores_gemma":[0.998991,0.00008726054,0.00003709034,0.00001319213,0.00004446462,0.0001019516,0.0005474123,0.000005751405,0.0001718392],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7579106,"threshold_uncertainty_score":0.2974883,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03185673215479406,"score_gpt":0.2825720827832852,"score_spread":0.2507153506284911,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}