{"id":"W4205659437","doi":"10.1186/s40168-021-01185-9","title":"Immune milieu and microbiome of the distal urethra in Ugandan men: impact of penile circumcision and implications for HIV susceptibility","year":2022,"lang":"en","type":"article","venue":"Microbiome","topic":"Genital Health and Disease","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; Canada Research Chairs; University of Toronto; University of New Brunswick","funders":"Fogarty International Center; National Institutes of Health; University of Toronto; National Institute of Allergy and Infectious Diseases; Ontario HIV Treatment Network","keywords":"Urethra; Biology; Immune system; Sex organ; Internal medicine; Immunology; Urology; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002671989,0.0002587232,0.0002827767,0.0003213744,0.0007239712,0.0006546452,0.0001433092,0.0002807597,0.001625754],"category_scores_gemma":[0.001077955,0.0002983746,0.0001520854,0.0004377594,0.0003971484,0.0003761094,0.0007377364,0.0003486165,0.0001013363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002643056,"about_ca_system_score_gemma":0.0003543732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002957179,"about_ca_topic_score_gemma":0.005001665,"domain_scores_codex":[0.9997676,0.00008618008,0.00001274205,0.00004392858,0.00003076909,0.00005884272],"domain_scores_gemma":[0.9996455,0.00006165524,0.000145767,0.00001589471,0.00004194893,0.00008925359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000548858,0.00008991025,0.9684798,0.0002389549,0.00006157088,0.0004706849,0.002904251,0.0001785475,0.005793365,0.00005375483,0.0002514988,0.0209288],"study_design_scores_gemma":[0.000005355065,0.0005183828,0.9945948,0.0001179906,0.0000296219,0.0008211833,0.0023302,0.000157173,0.0005177394,0.00006056108,0.0008346108,0.00001247868],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983101,0.001280965,0.00005392318,0.00004923162,0.000004348117,0.000009345998,0.00008864295,0.000001624427,0.000201754],"genre_scores_gemma":[0.9991253,0.0004495546,0.0001626069,0.00003274539,0.000006457074,0.00000834674,0.00005190353,0.000001160705,0.0001619746],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002957179,"threshold_uncertainty_score":0.005879879,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01153206040691605,"score_gpt":0.3011627241832138,"score_spread":0.2896306637762978,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}