{"id":"W4205741575","doi":"10.1093/mmy/myac004","title":"Assessment of panfungal PCR performance with formalin-fixed paraffin-embedded tissue specimens","year":2022,"lang":"en","type":"review","venue":"Medical Mycology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Blastomyces; Cryptococcus neoformans; Biology; Amplicon; Polymerase chain reaction; Histopathology; Microbiology; Sanger sequencing; Blastomyces dermatitidis; DNA extraction; Pathology; DNA sequencing; Blastomycosis; DNA; Medicine; Genetics; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006536115,0.0005398801,0.001025455,0.003883764,0.0001508039,0.0005579681,0.0006269036,0.0004430332,0.001408669],"category_scores_gemma":[0.004467103,0.0002140106,0.0004701302,0.002462053,0.0003285877,0.0007251647,0.0002973549,0.0003451423,0.0005649159],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004844903,"about_ca_system_score_gemma":0.001115921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001211374,"about_ca_topic_score_gemma":0.003120756,"domain_scores_codex":[0.9984443,0.0005402245,0.0002891842,0.0001597103,0.0004913089,0.00007532167],"domain_scores_gemma":[0.9964467,0.001358951,0.0005732655,0.000121455,0.001430582,0.00006920929],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0003717989,0.00005346305,0.01009862,0.05924308,0.0006002027,0.0006389704,0.00038057,0.0004018664,0.01823741,0.0006652191,0.004594821,0.904714],"study_design_scores_gemma":[0.000119432,0.003032925,0.1089332,0.04604423,0.006470306,0.0161126,0.001646291,0.001103396,0.05984037,0.001117639,0.755432,0.0001476328],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00516865,0.9924931,0.0006744962,0.0001298394,0.0001129883,0.00004716951,0.00007890357,0.00001256872,0.001282258],"genre_scores_gemma":[0.03572908,0.9592999,0.003569122,0.000194654,0.0001427937,0.00006490426,0.0002430923,0.000009977016,0.0007464986],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.006536115,"threshold_uncertainty_score":0.0345667,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05690236442366374,"score_gpt":0.3921047044797626,"score_spread":0.3352023400560989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}