{"id":"W4205782577","doi":"10.1099/ijsem.0.003869","title":"Necessity and rationale for the proposed name changes in the classification of Mollicutes species. Reply to: ‘Recommended rejection of the names Malacoplasma gen. nov., Mesomycoplasma gen. nov., Metamycoplasma gen. nov., Metamycoplasmataceae fam. nov., Mycoplasmoidaceae fam. nov., Mycoplasmoidales ord. nov., Mycoplasmoides gen. nov., Mycoplasmopsis gen. nov. [Gupta, Sawnani, Adeolu, Alnajar and Oren 2018] and all proposed species comb. nov. placed therein’, by M. Balish et al. (Int J Syst Evol Microbiol, 2019;69:3650–3653)","year":2020,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Nomenclature; Taxonomy (biology); Taxon; Mollicutes; Taxonomic rank; Evolutionary biology; Zoology; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.003929899,0.00152598,0.002835199,0.001087558,0.001140253,0.0004513727,0.002032057,0.0009598545,0.0004559582],"category_scores_gemma":[0.001707335,0.00102788,0.0007102648,0.001057508,0.001954327,0.0009676509,0.001097865,0.00148401,0.00006153926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006768242,"about_ca_system_score_gemma":0.0009645132,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007266162,"about_ca_topic_score_gemma":0.001531897,"domain_scores_codex":[0.98962,0.00253189,0.003986544,0.001778858,0.000723963,0.001358687],"domain_scores_gemma":[0.9880944,0.004343384,0.003717526,0.001125726,0.002352626,0.0003663653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003408172,0.0009257799,0.007990414,0.003032395,0.004335284,0.00002319567,0.003194132,0.000377202,0.8437171,0.00132204,0.1315168,0.0001574347],"study_design_scores_gemma":[0.05561743,0.01087464,0.06549142,0.01733404,0.01004012,0.0440645,0.05400487,0.009051407,0.3785455,0.001081547,0.3451591,0.008735492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9301793,0.02207374,0.001401888,0.03008057,0.002565741,0.006859376,0.00660691,0.00009084266,0.0001416529],"genre_scores_gemma":[0.979603,0.0104565,0.002620512,0.003370171,0.0003412777,0.0004565646,0.001404081,0.0001759931,0.001571897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4651716,"threshold_uncertainty_score":0.9997489,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03400414177711923,"score_gpt":0.2669290368848818,"score_spread":0.2329248951077626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}