{"id":"W4205893034","doi":"10.1038/s43705-022-00088-6","title":"Genomic evidence of functional diversity in DPANN archaea, from oxic species to anoxic vampiristic consortia","year":2022,"lang":"en","type":"article","venue":"ISME Communications","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Center for Northern Studies","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Parks Canada; Compute Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canada First Research Excellence Fund; ArcticNet; Université Laval","keywords":"Archaea; Anoxic waters; Biology; Halophile; Metagenomics; Extreme environment; Ecology; Thaumarchaeota; Extremophile; Geomicrobiology; Crenarchaeota; Phototroph; Microbial ecology; Euryarchaeota; Microbial population biology; Microorganism; Environmental biotechnology; Bacteria; Botany; Photosynthesis; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001644206,0.000275356,0.0001907879,0.001018392,0.0003436802,0.0004921966,0.0001289057,0.0002155925,0.000539521],"category_scores_gemma":[0.0003629491,0.0001628156,0.0001946559,0.001085534,0.0003254514,0.0001623633,0.0004857622,0.0001642587,0.0001324401],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002521783,"about_ca_system_score_gemma":0.0003497162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006109436,"about_ca_topic_score_gemma":0.01197017,"domain_scores_codex":[0.9998617,0.000007370347,0.000009749775,0.00006498992,0.00002373055,0.00003240835],"domain_scores_gemma":[0.9997447,0.00004201099,0.0000606245,0.00003594974,0.00005852775,0.00005819191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004497917,0.00003457225,0.1884637,0.0002125422,0.0001133881,0.0002692982,0.0009732365,0.0002999577,0.7886515,0.0004328345,0.0001602453,0.01993896],"study_design_scores_gemma":[0.000006594062,0.00007508128,0.980523,0.00001872928,0.00005942772,0.0006050192,0.000510558,0.000382182,0.01368018,0.0002183499,0.003909618,0.00001116663],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996848,0.0004253795,0.0004054748,0.00002081662,0.000003629699,0.00000639302,0.001362984,0.0000172788,0.0009099184],"genre_scores_gemma":[0.9961095,0.0002679178,0.0009859268,0.0000392117,0.000004241642,0.000008380569,0.00210834,0.0000061485,0.0004702446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006109436,"threshold_uncertainty_score":0.01214778,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1285292034466727,"score_gpt":0.2865210694168062,"score_spread":0.1579918659701334,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}