{"id":"W4206012265","doi":"10.1101/2021.12.30.474559","title":"Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Universität zu Köln; Deutsche Forschungsgemeinschaft","keywords":"Cell wall; Biology; Lytic cycle; Protoplast; Flagellate; Xyloglucan; Cell biology; Amoeba (genus); Chitin; Lysin; Gene; Microbiology; Biochemistry; Botany; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001451262,0.0002645898,0.0002573757,0.0009124551,0.0003729028,0.0005823832,0.0001585092,0.0004731504,0.001750491],"category_scores_gemma":[0.0001890924,0.0001640111,0.0004266815,0.0007168883,0.0002783031,0.0003656296,0.0003342477,0.0004230741,0.0007955059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002097365,"about_ca_system_score_gemma":0.0002446633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006089828,"about_ca_topic_score_gemma":0.0008241585,"domain_scores_codex":[0.9998137,0.00001173423,0.000009656496,0.00009148479,0.00003058728,0.00004275968],"domain_scores_gemma":[0.9998351,0.0000356292,0.00004725995,0.00001515283,0.00003496621,0.00003186067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008309739,0.000008670838,0.002082694,0.00006272388,0.000007683989,0.0000747949,0.00005284884,0.00002920411,0.9949727,0.00009578819,0.00006878492,0.00246087],"study_design_scores_gemma":[0.00002175704,0.0006409945,0.6527352,0.0000884726,0.0001441904,0.001793004,0.001441467,0.003766689,0.3165374,0.001042185,0.02172856,0.00006006897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.971026,0.004462071,0.007640055,0.0002466761,0.00007982917,0.00006004173,0.01155402,0.0001575671,0.004773799],"genre_scores_gemma":[0.9650334,0.002633828,0.01042321,0.0003406838,0.00007266489,0.0001676708,0.01287614,0.00007260421,0.008379706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001750491,"threshold_uncertainty_score":0.005855978,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01671291986173485,"score_gpt":0.2280620569109172,"score_spread":0.2113491370491824,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}