{"id":"W4206023599","doi":"10.1080/21505594.2021.2006890","title":"Versatile lifestyles of <i>Edwardsiella</i>: Free-living, pathogen, and core bacterium of the aquatic resistome","year":2021,"lang":"en","type":"article","venue":"Virulence","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Trinity Western University; Western University","funders":"National Natural Science Foundation of China; Li Ka Shing Foundation","keywords":"Edwardsiella tarda; Resistome; Biology; rpoS; Microbiology; Edwardsiella ictaluri; Plasmid; Microbiome; Horizontal gene transfer; Pathogen; Bacteria; Ecology; Gene; Mobile genetic elements; Genetics; Fish <Actinopterygii>; Phylogenetics; Gene expression; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001224526,0.0001131406,0.000200828,0.00002900127,0.00007779071,0.000005927514,0.0002856926,0.00009095402,0.0003117757],"category_scores_gemma":[0.000257446,0.00008279515,0.00008535803,0.0001477682,0.0003333057,0.00004176333,0.0003725228,0.00009622579,0.00002935876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007436187,"about_ca_system_score_gemma":0.00005710303,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005197738,"about_ca_topic_score_gemma":0.00006343468,"domain_scores_codex":[0.9992619,0.0001161475,0.0002211633,0.0002062587,0.00003850359,0.0001560588],"domain_scores_gemma":[0.9991862,0.0001082957,0.0001624571,0.0004697066,0.0000590785,0.00001426023],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002304998,0.00006910438,0.01240221,0.000108178,0.00007663434,0.000002461906,0.0006132731,4.295044e-7,0.9789355,0.0006119165,0.006770681,0.0003865201],"study_design_scores_gemma":[0.001071893,0.00009685754,0.2772444,0.0006440223,0.000367459,0.00003022824,0.001407703,0.000004603492,0.6687639,0.0003010035,0.04973648,0.0003314391],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923974,0.005510577,0.00002239388,0.000150707,0.0002821428,0.0001309733,0.0001828405,0.00001520822,0.001307703],"genre_scores_gemma":[0.9959626,0.0002516538,0.00008197566,0.0001637664,0.00001055621,0.000003795234,0.00002945888,0.000007872153,0.003488296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3101717,"threshold_uncertainty_score":0.3413725,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009124797062516156,"score_gpt":0.2033475531395366,"score_spread":0.1942227560770205,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}