{"id":"W4206077042","doi":"10.1186/s42523-022-00162-3","title":"Compositional analysis of the tonsil microbiota in relationship to Streptococcus suis disease in nursery pigs in Ontario","year":2022,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canada First Research Excellence Fund; Ontario Ministry of Agriculture, Food and Rural Affairs; Swine Innovation Porc; Compute Canada","keywords":"Streptococcus suis; Biology; Tonsil; Microbiome; Streptococcus; Microbiology; Disease; Serotype; Immunology; Bacteria; Pathology; Medicine; Genetics; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003338327,0.0002151452,0.000248151,0.0006707518,0.0008557751,0.0005410797,0.0002433208,0.0002771853,0.0007220395],"category_scores_gemma":[0.0003723238,0.0002216063,0.000271113,0.0006370798,0.0005217315,0.0001882772,0.0003707584,0.000202083,0.000159685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002821473,"about_ca_system_score_gemma":0.001821789,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1989153,"about_ca_topic_score_gemma":0.441651,"domain_scores_codex":[0.999765,0.00002248174,0.00001110565,0.00006744108,0.00005891849,0.00007515758],"domain_scores_gemma":[0.9996704,0.00003036078,0.0001125266,0.00001287457,0.0001081227,0.00006578142],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004090317,0.00004547128,0.9728837,0.00005069733,0.00002908445,0.0006023809,0.001269925,0.00007458119,0.0209096,0.00002037082,0.00008740938,0.003617625],"study_design_scores_gemma":[0.000001815508,0.00009451186,0.9982263,0.000004499119,0.00001046269,0.0001284975,0.000882347,0.0001151747,0.0003548423,0.000006144754,0.000172908,0.000002458432],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995192,0.00004173603,0.00006011134,0.000009415737,0.000001205011,0.00000687884,0.0001293435,0.000001262736,0.000230828],"genre_scores_gemma":[0.9990512,0.00008548376,0.0001652952,0.00001578965,0.000001489753,0.000008613815,0.0002698822,0.000001477486,0.0004007325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8010848,"threshold_uncertainty_score":0.3955149,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02185739324754778,"score_gpt":0.2785646663050997,"score_spread":0.2567072730575519,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}