{"id":"W4206079058","doi":"10.1007/s00438-021-01829-3","title":"Phylogenomic analysis of the Erwiniaceae supports reclassification of Kalamiella piersonii to Pantoea piersonii comb. nov. and Erwinia gerundensis to the new genus Duffyella gen. nov. as Duffyella gerundensis comb. nov","year":2022,"lang":"en","type":"article","venue":"Molecular Genetics and Genomics","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Erwinia; Biology; Type species; Pantoea; Taxonomy (biology); Zoology; Genus; Genetics; Bacteria; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003135339,0.0004686795,0.0003910074,0.0009142421,0.000586048,0.0007408084,0.0001768483,0.0003331511,0.001560524],"category_scores_gemma":[0.0007179432,0.0001128209,0.000490381,0.001303491,0.0001968163,0.0004300083,0.0005269345,0.0006045313,0.0007225998],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002797062,"about_ca_system_score_gemma":0.0004837305,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003155609,"about_ca_topic_score_gemma":0.004031925,"domain_scores_codex":[0.9997763,0.00002147921,0.0000220232,0.00007577521,0.00004809736,0.00005629681],"domain_scores_gemma":[0.9995232,0.0001136473,0.00008656174,0.00006284547,0.0001245911,0.00008922233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009181388,0.0002603126,0.1706431,0.0004187297,0.0001747276,0.001131088,0.001002987,0.000549235,0.7395991,0.0005311347,0.001015161,0.08375613],"study_design_scores_gemma":[0.00003332508,0.0004451174,0.9218619,0.0001045106,0.0002712134,0.003396914,0.001905163,0.002867847,0.04176738,0.000565285,0.02674551,0.00003592677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867361,0.001147447,0.004119497,0.0003079783,0.00007378001,0.00005497567,0.003495928,0.0001342169,0.003929983],"genre_scores_gemma":[0.9721839,0.0009586218,0.009481487,0.0003575088,0.00002524601,0.00004148462,0.01441066,0.00005921861,0.002482028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003155609,"threshold_uncertainty_score":0.006274521,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008942828535855115,"score_gpt":0.1938552814178182,"score_spread":0.1849124528819631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}