{"id":"W4206235088","doi":"10.17504/protocols.io.bumknu4w","title":"SARS-CoV2 GISAID submission protocol v3","year":2021,"lang":"en","type":"preprint","venue":"","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Protocol (science); Computer science; Biology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01481297,0.001144772,0.001337048,0.002677158,0.002392352,0.005150578,0.003353039,0.002470448,0.2387613],"category_scores_gemma":[0.03230011,0.001809224,0.0009862304,0.002404915,0.0008993153,0.002726246,0.00598647,0.002930688,0.2560706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001518012,"about_ca_system_score_gemma":0.006298894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005416386,"about_ca_topic_score_gemma":0.004444835,"domain_scores_codex":[0.9873179,0.004552088,0.002075605,0.001071164,0.003789458,0.001193738],"domain_scores_gemma":[0.9816332,0.003994459,0.001040098,0.005429283,0.006771618,0.001131372],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000921541,0.00007173578,0.000680442,0.000744839,0.00004937263,0.0001677926,0.0003498826,0.0001849872,0.009804264,0.004233802,0.9646995,0.01809194],"study_design_scores_gemma":[0.0001516815,0.00007340168,0.0009931725,0.0002075459,0.00001995397,0.0001843536,0.0002003937,0.0003461611,0.01124079,0.002721529,0.9837944,0.00006666201],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"protocol","genre_scores_codex":[0.008324156,0.001501696,0.1446112,0.007652434,0.003582453,0.01545609,0.6225778,0.09794328,0.09835094],"genre_scores_gemma":[0.01631147,0.00113944,0.08106394,0.004014818,0.0006147404,0.01916728,0.7672931,0.02719946,0.08319583],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.2387613,"threshold_uncertainty_score":0.798736,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08713175989894884,"score_gpt":0.384175153586952,"score_spread":0.2970433936880031,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}