{"id":"W4206272014","doi":"10.1101/2022.01.13.476155","title":"Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Environment and Climate Change Canada; University of Prince Edward Island; Canadian Food Inspection Agency; Memorial University of Newfoundland","funders":"National Institute of Allergy and Infectious Diseases; Horizon 2020 Framework Programme; Bundesministerium für Bildung und Forschung; U.S. Department of Health and Human Services; National Institutes of Health; Department for Environment, Food and Rural Affairs, UK Government; Environment and Climate Change Canada","keywords":"Influenza A virus subtype H5N1; Highly pathogenic; Waterfowl; Goose; Geography; Bird migration; Outbreak; Avian influenza virus; Biology; Wildlife; Virology; Zoology; Virus; Ecology; Habitat","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005321815,0.0008966373,0.001793288,0.0009544609,0.0001616519,0.00008164931,0.0009998988,0.0003499796,0.0004659288],"category_scores_gemma":[0.0009360703,0.0009469417,0.000315142,0.002591689,0.0002896403,0.00012412,0.001249644,0.002067908,0.0002004129],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006319496,"about_ca_system_score_gemma":0.001307924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003073875,"about_ca_topic_score_gemma":0.00008482564,"domain_scores_codex":[0.9939525,0.000472511,0.00136489,0.001661389,0.001423874,0.001124909],"domain_scores_gemma":[0.9956951,0.0002114137,0.0004926405,0.002228754,0.0007419725,0.0006300993],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006559826,0.0006861011,0.2611927,0.0007262799,0.0006690968,0.0005833413,0.0001978656,0.0002739493,0.7334149,0.00001075912,0.001552804,0.00003620078],"study_design_scores_gemma":[0.00237355,0.0005379294,0.8100397,0.001066884,0.0003838016,2.376535e-8,0.00002201075,0.00008593013,0.05585758,5.01831e-7,0.128444,0.001188088],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872161,0.00525195,0.0001307066,0.0005448969,0.000426683,0.002004696,0.004194493,0.0001975661,0.00003297319],"genre_scores_gemma":[0.9921221,0.002342196,0.002357692,0.001864712,0.0003571099,0.0006306014,0.000008593378,0.0003012606,0.00001579015],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6775573,"threshold_uncertainty_score":0.9992981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02665366628171201,"score_gpt":0.2778316820290445,"score_spread":0.2511780157473325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}