{"id":"W4206272014","doi":"10.1101/2022.01.13.476155","title":"Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Environment and Climate Change Canada; University of Prince Edward Island; Canadian Food Inspection Agency; Memorial University of Newfoundland","funders":"National Institute of Allergy and Infectious Diseases; Horizon 2020 Framework Programme; Bundesministerium für Bildung und Forschung; U.S. Department of Health and Human Services; National Institutes of Health; Department for Environment, Food and Rural Affairs, UK Government; Environment and Climate Change Canada","keywords":"Influenza A virus subtype H5N1; Highly pathogenic; Waterfowl; Goose; Geography; Bird migration; Outbreak; Avian influenza virus; Biology; Wildlife; Virology; Zoology; Virus; Ecology; Habitat","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003497716,0.0001673337,0.0001361637,0.0004440814,0.0007715682,0.0006441124,0.0001382206,0.0003021124,0.004538914],"category_scores_gemma":[0.0005463072,0.00005098397,0.0001262584,0.0005066893,0.00009693868,0.0001594214,0.0002653122,0.0002453697,0.001100573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001154463,"about_ca_system_score_gemma":0.001187157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1790385,"about_ca_topic_score_gemma":0.3399786,"domain_scores_codex":[0.9998721,0.00001133071,0.000006812278,0.00002315893,0.00006370567,0.00002291166],"domain_scores_gemma":[0.9995106,0.00004023594,0.00005104483,0.00001339662,0.0002968192,0.00008792656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001164362,0.0001270203,0.4985742,0.0006810075,0.0002037884,0.002692724,0.003920174,0.0004674817,0.02165183,0.0006117907,0.3498464,0.1200592],"study_design_scores_gemma":[0.00001894193,0.00008265972,0.9046747,0.0001342141,0.00006277108,0.0004534235,0.0029898,0.0002732397,0.002493161,0.00008846047,0.08871142,0.00001715143],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8975912,0.006987873,0.0004603533,0.02154303,0.004901957,0.0001086063,0.02028729,0.0002081537,0.04791158],"genre_scores_gemma":[0.9156718,0.006066349,0.0008971944,0.004300996,0.001984925,0.00004982918,0.01662175,0.0000714884,0.05433569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1790385,"threshold_uncertainty_score":0.3559927,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02665366628171201,"score_gpt":0.2778316820290445,"score_spread":0.2511780157473325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}