{"id":"W4206305640","doi":"10.3389/fpls.2021.787354","title":"Characterization and Mapping of retr04, retr05 and retr06 Broad-Spectrum Resistances to Turnip Mosaic Virus in Brassica juncea, and the Development of Robust Methods for Utilizing Recalcitrant Genotyping Data","year":2022,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Biotechnology and Biological Sciences Research Council; University of Warwick; Directorate for Biological Sciences; China Scholarship Council; Agriculture and Agri-Food Canada; UK Research and Innovation","keywords":"Turnip mosaic virus; Biology; Genetics; Quantitative trait locus; Genotyping; Potyvirus; Brassica; Locus (genetics); Plant disease resistance; Gene; Genotype; Plant virus; Virus; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002397381,0.0003367725,0.0002155491,0.0009418668,0.0001788853,0.000371849,0.0003505248,0.0003217815,0.0009972075],"category_scores_gemma":[0.0002261187,0.0001764757,0.0004279161,0.000432184,0.0001265172,0.000129495,0.000241913,0.0004851507,0.0005591247],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002805542,"about_ca_system_score_gemma":0.000215948,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002186497,"about_ca_topic_score_gemma":0.004127623,"domain_scores_codex":[0.9998135,0.00001700421,0.00002555192,0.00006504123,0.00005190521,0.00002709073],"domain_scores_gemma":[0.9997496,0.00004677668,0.00008586366,0.00003268018,0.00002766686,0.00005744572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004628564,0.00002345752,0.001598067,0.00002631774,0.000006737319,0.00005744821,0.00004650914,0.00004313856,0.995223,0.00003724327,0.00002091854,0.002870916],"study_design_scores_gemma":[0.00007136525,0.001265224,0.5714728,0.0000533423,0.0002217538,0.003343881,0.0004731171,0.00139751,0.4063442,0.0001806224,0.0151365,0.00003966279],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937711,0.0007349096,0.002545324,0.00004147168,0.000008869833,0.00004094656,0.001580969,0.00007542567,0.001200911],"genre_scores_gemma":[0.9647039,0.0009285737,0.01247003,0.00007936216,0.00001723158,0.0000691844,0.01658002,0.00006918085,0.005082395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002186497,"threshold_uncertainty_score":0.004347503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08012387315726911,"score_gpt":0.3023086110882386,"score_spread":0.2221847379309695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}