{"id":"W4206341757","doi":"10.1186/s40793-022-00398-1","title":"Metagenomic community composition and resistome analysis in a full-scale cold climate wastewater treatment plant","year":2022,"lang":"en","type":"article","venue":"Environmental Microbiome","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; University of Manitoba","funders":"British Columbia Centre for Disease Control; University of British Columbia; University of Manitoba","keywords":"Resistome; Integron; Biology; Actinobacteria; Proteobacteria; Siphoviridae; Metagenomics; Firmicutes; Microbiology; Antibiotic resistance; Bacteriophage; 16S ribosomal RNA; Bacteria; Genetics; Antibiotics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003529525,0.0002834875,0.0003546317,0.000158857,0.0006325805,0.00003192835,0.0002306584,0.00004654453,0.004160766],"category_scores_gemma":[4.885555e-7,0.0002675095,0.0001350651,0.000308695,0.000396204,0.0001604293,0.0009914857,0.0002920916,0.0003042273],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001543227,"about_ca_system_score_gemma":0.000002151608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004043799,"about_ca_topic_score_gemma":0.0001619338,"domain_scores_codex":[0.998071,0.0004329389,0.0003347474,0.0004313253,0.0002133896,0.0005165574],"domain_scores_gemma":[0.9993369,0.00004686771,0.00009394644,0.000327107,1.412427e-7,0.0001950102],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000102164,0.00116664,0.108128,0.000005689985,0.00009398322,0.00003806077,0.0006658746,0.001610657,0.8880208,0.000001945529,0.00003954466,0.0001266917],"study_design_scores_gemma":[0.00253481,0.0007636673,0.792279,0.000009174575,0.0005990421,0.0001774503,0.001455542,0.001032389,0.1912248,0.00001937009,0.00914811,0.0007566735],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979301,0.0001362197,0.00000261779,0.0001718346,0.00004351166,0.0003537676,0.001075538,0.00002365557,0.0002627391],"genre_scores_gemma":[0.998339,0.0001708151,0.0002844035,0.0003271738,0.000006926201,0.00003091161,0.0005043514,0.00002325115,0.0003131796],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.696796,"threshold_uncertainty_score":0.9999777,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01403205899184497,"score_gpt":0.2284938595770459,"score_spread":0.2144618005852009,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}