{"id":"W4206343279","doi":"10.1038/s41522-021-00263-y","title":"Microbial co-occurrence network topological properties link with reactor parameters and reveal importance of low-abundance genera","year":2022,"lang":"en","type":"article","venue":"npj Biofilms and Microbiomes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":223,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; China Scholarship Council; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Methanogenesis; Mesophile; Abundance (ecology); Microbial population biology; Relative species abundance; Betweenness centrality; Biology; Thermophile; Hydrolysis; Topology (electrical circuits); Ecology; Methane; Mathematics; Bacteria; Biochemistry; Enzyme; Statistics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005121458,0.000365802,0.0003451129,0.003699754,0.0004227003,0.0008758231,0.0002565689,0.0002971114,0.001767264],"category_scores_gemma":[0.003225268,0.0002230099,0.0003667161,0.002391233,0.0003090411,0.0007327705,0.000649997,0.0002820206,0.0002429902],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004099811,"about_ca_system_score_gemma":0.0002716592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00187876,"about_ca_topic_score_gemma":0.00252423,"domain_scores_codex":[0.9994566,0.0001141556,0.00004982955,0.0001818532,0.000116188,0.00008140182],"domain_scores_gemma":[0.9978603,0.0008827467,0.0006626134,0.0001172101,0.0003277144,0.0001495395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004098185,0.000124232,0.8660026,0.0005018659,0.0006732696,0.000285767,0.0005019406,0.02307417,0.05764244,0.002541185,0.0009254483,0.04731733],"study_design_scores_gemma":[0.00001225737,0.0001295546,0.8131094,0.00005495978,0.0002703995,0.0007162151,0.0006430757,0.1667393,0.01091489,0.005228142,0.002126411,0.00005534779],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9848065,0.0003295111,0.01227179,0.00006431773,0.000008801631,0.00002281611,0.001268066,0.00008947757,0.001138778],"genre_scores_gemma":[0.9963098,0.00008705736,0.002365234,0.000006849759,0.000005788978,0.00002392233,0.0009399106,0.000009379921,0.0002520537],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003699754,"threshold_uncertainty_score":0.005912125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01357648972138982,"score_gpt":0.2305189552596946,"score_spread":0.2169424655383048,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}