{"id":"W4206482793","doi":"10.1128/spectrum.01322-21","title":"Whole-Genome Sequencing Reveals the High Nosocomial Transmission and Antimicrobial Resistance of Clostridioides difficile in a Single Center in China, a Four-Year Retrospective Study","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Key Research and Development Program of China; Higher Education Discipline Innovation Project; Natural Science Foundation of Guangdong Province; National Natural Science Foundation of China; Ministère de l'Éducation, du Loisir et du Sport Québec","keywords":"Carriage; Multilocus sequence typing; Population; Clostridium difficile; Epidemiology; Microbiology; Biology; Transmission (telecommunications); Antibiotic resistance; Drug resistance; Clostridioides; Medicine; Genotype; Antibiotics; Internal medicine; Genetics; Gene; Environmental health; Pathology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006736228,0.0005617501,0.0004446668,0.001119908,0.001164813,0.0006149134,0.0004472008,0.0004914409,0.0008934017],"category_scores_gemma":[0.000962489,0.0004572885,0.0005576283,0.001310782,0.0004972846,0.0003798854,0.0005779524,0.000311052,0.0001368264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001038446,"about_ca_system_score_gemma":0.001261072,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03462516,"about_ca_topic_score_gemma":0.03136477,"domain_scores_codex":[0.9994546,0.00006837607,0.00006691487,0.0001700523,0.0001068404,0.0001332407],"domain_scores_gemma":[0.999228,0.00007139498,0.0001649157,0.0001095248,0.000163996,0.0002621621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005790916,0.00002073709,0.9957213,0.00001263405,0.00004749375,0.0007539857,0.0003714022,0.00004776748,0.001607805,0.00001689854,0.0000926745,0.001249251],"study_design_scores_gemma":[0.000003600107,0.00005617531,0.9980431,0.00000465797,0.0000411498,0.0007478554,0.0004610623,0.0001998435,0.0002172287,0.00001408196,0.0002061815,0.000005042709],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995798,0.00007676449,0.00008585204,0.00002273965,0.000002002688,0.000006119028,0.0001099056,0.000001993291,0.0001147767],"genre_scores_gemma":[0.9995463,0.00005365334,0.00005568079,0.00003442638,0.000003367798,0.000004030196,0.0001840669,0.000001813811,0.0001166201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03462516,"threshold_uncertainty_score":0.06884724,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01587870520774199,"score_gpt":0.2450768426834917,"score_spread":0.2291981374757497,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}