{"id":"W4206532573","doi":"10.14745/ccdr.v47i03a03","title":"Canadian national COVID-19 genomics surveillance priorities for existing and emerging variants of concern","year":2021,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Genome Canada","keywords":"Coronavirus disease 2019 (COVID-19); Genomics; 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Pandemic; Virology; Genome; Biology; Medicine; Genetics; Outbreak; Gene; Infectious disease (medical specialty); Disease","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00473707,0.0008110274,0.0007184031,0.002861712,0.005978456,0.003204024,0.002391402,0.001915112,0.01294036],"category_scores_gemma":[0.01007784,0.0004444949,0.001410005,0.002951653,0.0009253258,0.0009281072,0.001954957,0.002861388,0.001568993],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0641354,"about_ca_system_score_gemma":0.4141993,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9925116,"about_ca_topic_score_gemma":0.9952757,"domain_scores_codex":[0.9943494,0.000481015,0.0002172962,0.000330373,0.002414915,0.002207063],"domain_scores_gemma":[0.9719694,0.001049896,0.0009039523,0.0002048238,0.01720289,0.00866896],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001999322,0.0001124546,0.0623396,0.0005203222,0.0001012829,0.0003614819,0.0007478637,0.0006066796,0.00106498,0.007533549,0.8641076,0.06230421],"study_design_scores_gemma":[0.0001987257,0.0001881173,0.2203268,0.002240194,0.000306271,0.0004546195,0.004817589,0.00183985,0.00124066,0.003215566,0.7650033,0.0001684275],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.08435462,0.0298427,0.008168845,0.5312377,0.009853051,0.0026053,0.1040741,0.001790261,0.2280736],"genre_scores_gemma":[0.4550715,0.04244957,0.04929864,0.2347787,0.00317407,0.001834266,0.08185038,0.0007471236,0.1307958],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9358646,"threshold_uncertainty_score":0.4653371,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08899647796546127,"score_gpt":0.3716735704442516,"score_spread":0.2826770924787903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}