{"id":"W4206552974","doi":"10.1093/bioinformatics/btaa924","title":"Scool: a new data storage format for single-cell Hi-C data","year":2020,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; Royal Bank of Canada; National Bar Institute","keywords":"Computer science; File format; Reuse; Database; Data format; Data file; Computer data storage; Raw data; Operating system; Programming language; Computer hardware","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005381555,0.002377326,0.00176896,0.003613373,0.00193416,0.005574774,0.005558076,0.002223802,0.1050628],"category_scores_gemma":[0.01989207,0.001569124,0.001777025,0.004274148,0.0009700966,0.005861197,0.005589482,0.003617744,0.07839408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001764932,"about_ca_system_score_gemma":0.003689004,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003860986,"about_ca_topic_score_gemma":0.00333781,"domain_scores_codex":[0.9970288,0.0003463701,0.000534788,0.0007565077,0.0009489352,0.0003847139],"domain_scores_gemma":[0.9866248,0.003505527,0.0009522483,0.004682194,0.003454676,0.0007805756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002991754,0.00008479983,0.002340647,0.002119808,0.0001972659,0.000331972,0.0005722152,0.001819987,0.02681313,0.00734078,0.8902623,0.06512527],"study_design_scores_gemma":[0.0004828785,0.0001490609,0.005498353,0.0006000543,0.0001352016,0.0004789916,0.000301494,0.01302214,0.09502698,0.01381817,0.8699556,0.0005311256],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.005409984,0.0005639085,0.1620177,0.0009635633,0.001093613,0.0004859434,0.342259,0.4769624,0.01024401],"genre_scores_gemma":[0.03156254,0.0007169205,0.163233,0.001431042,0.0004347818,0.002957486,0.6322182,0.1518277,0.01561825],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1050628,"threshold_uncertainty_score":0.3514702,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1262492012848909,"score_gpt":0.2726764264915457,"score_spread":0.1464272252066548,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}