{"id":"W4206937748","doi":"10.1093/jhered/esac004","title":"Weighted Single-Step GWAS for Body Mass Index and Scans for Recent Signatures of Selection in Yorkshire Pigs","year":2022,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Candidate gene; Single-nucleotide polymorphism; Genetics; Genome-wide association study; Haplotype; Runs of Homozygosity; Genetic architecture; Selection (genetic algorithm); SNP array; Purebred; Quantitative trait locus; Genetic association; SNP; Body mass index; Population; Gene; Breed; Allele; Genotype; Endocrinology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005664426,0.0002460052,0.0003418573,0.000507275,0.000280933,0.0003292381,0.0002018536,0.0002049721,0.001084094],"category_scores_gemma":[0.0007170902,0.0001769988,0.0004017058,0.0006456453,0.0002281773,0.0001222074,0.0003022317,0.0002163043,0.0001080722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000198592,"about_ca_system_score_gemma":0.0003305202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01101542,"about_ca_topic_score_gemma":0.02952387,"domain_scores_codex":[0.9997525,0.00004721135,0.00002071018,0.0001218433,0.00002941451,0.00002836589],"domain_scores_gemma":[0.9994851,0.0001757873,0.0001381447,0.00007729979,0.0000585159,0.00006513295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005181144,0.00002959218,0.9642301,0.00003654614,0.0003114532,0.0002480792,0.000161785,0.0003451832,0.02690019,0.00007156615,0.0001408392,0.007006672],"study_design_scores_gemma":[0.000007356762,0.00004898705,0.9987424,0.000002674601,0.00006372084,0.0001013443,0.00004477014,0.0005340753,0.0002999693,0.00001422059,0.000137661,0.000002943335],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993058,0.00005252534,0.0004189411,0.00000751775,0.000001820693,0.000003265794,0.0001363311,0.000006561614,0.00006721835],"genre_scores_gemma":[0.9982619,0.00004161747,0.0008673746,0.00001096356,0.000003241785,0.00001109347,0.0004792529,0.000006253444,0.0003183659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01101542,"threshold_uncertainty_score":0.02190262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01346775557299386,"score_gpt":0.2478158757948467,"score_spread":0.2343481202218528,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}