{"id":"W4206937748","doi":"10.1093/jhered/esac004","title":"Weighted Single-Step GWAS for Body Mass Index and Scans for Recent Signatures of Selection in Yorkshire Pigs","year":2022,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Candidate gene; Single-nucleotide polymorphism; Genetics; Genome-wide association study; Haplotype; Runs of Homozygosity; Genetic architecture; Selection (genetic algorithm); SNP array; Purebred; Quantitative trait locus; Genetic association; SNP; Body mass index; Population; Gene; Breed; Allele; Genotype; Endocrinology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002784884,0.00007918647,0.0001550272,0.00005151715,0.00006657571,0.000006208486,0.0001051883,0.00009127545,0.00002211628],"category_scores_gemma":[0.0000679002,0.00007374167,0.00006787309,0.00006749042,0.00003165108,0.000003436625,0.00002965084,0.000144641,1.447876e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002972931,"about_ca_system_score_gemma":0.0001074189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005831554,"about_ca_topic_score_gemma":0.00003004312,"domain_scores_codex":[0.9993082,0.00005579934,0.0002755923,0.0001180856,0.0001193258,0.0001229782],"domain_scores_gemma":[0.9994748,0.00003721723,0.0002437914,0.00005575527,0.0001457154,0.00004269888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006396431,0.001044003,0.03787128,0.0002692628,0.0003427229,0.00000201719,0.0002943288,0.01750478,0.87503,0.000801724,0.03247193,0.02797155],"study_design_scores_gemma":[0.01707309,0.02741192,0.3959711,0.000151555,0.0003413521,0.0002612646,0.002186632,0.00496449,0.241435,0.02911203,0.2800824,0.001009177],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9583527,0.001402645,0.03908438,0.0002315667,0.0004818703,0.0002934824,0.0000799925,0.000001806078,0.00007159358],"genre_scores_gemma":[0.9852064,0.00003564105,0.01423963,0.00005398709,0.0003486254,0.00001517691,0.00001725163,0.00001044851,0.00007279923],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.633595,"threshold_uncertainty_score":0.3007098,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01346775557299386,"score_gpt":0.2478158757948467,"score_spread":0.2343481202218528,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}