{"id":"W4206945255","doi":"10.1371/journal.ppat.1010257","title":"Turnip mosaic virus co-opts the vacuolar sorting receptor VSR4 to promote viral genome replication in plants by targeting viral replication vesicles to the endosome","year":2022,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"K. C. Wong Magna Fund in Ningbo University; Northeast Agricultural University; Chinese University of Hong Kong; Nanjing Agricultural University; Ningbo University; National Natural Science Foundation of China; Atara Biotherapeutics","keywords":"Turnip mosaic virus; Endosome; Biology; Viral replication; Vacuolar protein sorting; Cell biology; Virology; TSG101; Viral entry; Golgi apparatus; Viral protein; ESCRT; Virus; Potyvirus; Plant virus; Gene; Genetics; Intracellular; Endoplasmic reticulum; Microvesicles; microRNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00181892,0.0002023369,0.0002211718,0.00003433627,0.001385613,0.0001063385,0.0008795207,0.00004673646,0.0001123643],"category_scores_gemma":[0.0008908988,0.00007913027,0.00007239881,0.0005603037,0.00004042526,0.000113123,0.0005533271,0.0003794125,0.0001481706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001898008,"about_ca_system_score_gemma":0.00001573706,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002682573,"about_ca_topic_score_gemma":0.0001536111,"domain_scores_codex":[0.99698,0.0004982039,0.0004423401,0.0007992301,0.0006660268,0.0006141703],"domain_scores_gemma":[0.9989599,0.0003122518,0.0001912613,0.0003574628,0.00005365143,0.0001254661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007525119,0.0001063297,0.001180469,0.000003994545,0.00001760839,0.000004046367,0.001254362,0.00006458804,0.9812958,0.00001057168,0.005605882,0.01038112],"study_design_scores_gemma":[0.0002315933,0.0006908004,0.04377392,0.0000306427,0.00002014445,0.00001286583,0.002221545,0.0006977501,0.588526,0.0002039845,0.3630044,0.0005863742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9847799,0.0003799367,0.000002626823,0.007800123,0.00004403141,0.001572056,0.005271617,0.00008842131,0.00006132293],"genre_scores_gemma":[0.9955805,0.000119918,0.0001159994,0.001164058,0.0002681034,0.001220094,0.001353681,0.000005393619,0.0001722368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3927698,"threshold_uncertainty_score":0.9999145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03548035100956345,"score_gpt":0.26592471844341,"score_spread":0.2304443674338465,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}