{"id":"W4207011004","doi":"10.1101/2022.01.20.476458","title":"Genomic and transcriptomic characterization of Delta SARS-CoV-2 infection in free-ranging white-tailed deer ( <i>Odocoileus virginianus</i> )","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Manitoba; Public Health Agency of Canada; University of Saskatchewan; Environment and Climate Change Canada; Ministère des Ressources naturelles et des Forêts; Canadian Food Inspection Agency; Ministry of Energy, Northern Development and Mines; Sunnybrook Hospital","funders":"Sunnybrook Research Institute","keywords":"Odocoileus; Biology; Transcriptome; Host (biology); Virology; Clade; Wildlife; Gene; Genetics; Zoology; Gene expression; Phylogenetics; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007129958,0.0001473937,0.000133534,0.0004246862,0.0002118379,0.0002834685,0.00007392339,0.0001813633,0.0006529861],"category_scores_gemma":[0.0001115789,0.0000884063,0.0001374173,0.0002560948,0.0001809465,0.00006641982,0.0001090936,0.0001353881,0.0002719678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001606025,"about_ca_system_score_gemma":0.0001580599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004077528,"about_ca_topic_score_gemma":0.007833484,"domain_scores_codex":[0.9999362,0.000004483667,0.000002784809,0.00002473493,0.00001139721,0.00002031201],"domain_scores_gemma":[0.9999167,0.00001351078,0.0000236363,0.000005826987,0.00001910173,0.00002134365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003164104,0.00003518447,0.06192075,0.00002886469,0.00001503674,0.0002634701,0.0001459512,0.00007235147,0.9356015,0.00003495733,0.00009594102,0.001469597],"study_design_scores_gemma":[0.000009103518,0.0002637528,0.9597182,0.000008246657,0.0000218664,0.0007978142,0.000663451,0.0005408594,0.0363165,0.00004370089,0.001610394,0.000006124211],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976187,0.0001066262,0.0002711423,0.00001138169,0.000002851341,0.00001001901,0.001710793,0.000005361848,0.0002631003],"genre_scores_gemma":[0.9907801,0.0001489871,0.001146543,0.00006322012,0.000007376834,0.00002698611,0.006093215,0.00000939867,0.001724152],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004077528,"threshold_uncertainty_score":0.008107603,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02085146986512121,"score_gpt":0.2643840105968753,"score_spread":0.2435325407317541,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}