{"id":"W4207037095","doi":"10.1186/s12859-022-04568-3","title":"Iam hiQ—a novel pair of accuracy indices for imputed genotypes","year":2022,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency; Princess Margaret Cancer Centre; Sinai Health System; Lunenfeld-Tanenbaum Research Institute; Public Health Ontario; University of Toronto","funders":"University of Texas MD Anderson Cancer Center; National Institutes of Health; Deutsches Zentrum für Lungenforschung; Clalit Health Services; Radboud Universitair Medisch Centrum; Universität Salzburg; Umeå Universitet; Markey Cancer Center, University of Kentucky; Georg-August-Universität Göttingen; Lunds Universitet; Skånes universitetssjukhus; Radboud Universiteit; Newcastle University; National Cancer Institute; Universität Heidelberg; University of Liverpool; Vanderbilt University Medical Center; Huntsman Cancer Institute; Universidad de Oviedo; BC Cancer Agency; Vanderbilt University; Moffitt Cancer Center; Dartmouth College; Washington State University; Fred Hutchinson Cancer Research Center; World Health Organization","keywords":"Imputation (statistics); Computer science; Data mining; Software; Computational biology; Machine learning; Biology; Missing data","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004629813,0.0001056851,0.0001773867,0.00005540638,0.0001619669,0.000007150139,0.0002448008,0.00009708221,0.00002079449],"category_scores_gemma":[0.0004229669,0.000101518,0.00010357,0.0001010865,0.00004075284,0.00000427129,0.0002251806,0.00006411554,0.000003054813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001839245,"about_ca_system_score_gemma":0.0001555459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001610288,"about_ca_topic_score_gemma":0.00001593759,"domain_scores_codex":[0.9990891,0.00003351428,0.000441991,0.0001141177,0.0001040679,0.0002172575],"domain_scores_gemma":[0.9991099,0.0001108671,0.0004020023,0.0002494168,0.00008862872,0.00003918536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001120564,0.001951502,0.2641221,0.002225483,0.001783058,8.986738e-7,0.006311872,0.09867371,0.3418165,0.008550031,0.2131183,0.06032598],"study_design_scores_gemma":[0.006603157,0.003839849,0.1474434,0.00002475329,0.0002675276,0.00006502129,0.007161838,0.2180711,0.05114757,0.0013252,0.5626408,0.001409774],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6608101,0.0003583349,0.3365655,0.0002097374,0.000323619,0.0005877377,0.000738722,0.00002923822,0.0003769589],"genre_scores_gemma":[0.694197,0.00004271388,0.3035648,0.000601347,0.0001313467,0.0001378069,0.001021446,0.00002491083,0.00027863],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3495225,"threshold_uncertainty_score":0.4139785,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02559083988001442,"score_gpt":0.2752904179259309,"score_spread":0.2496995780459165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}