{"id":"W4207072531","doi":"10.1101/2022.01.24.477451","title":"Type IV pili is a critical virulence factor in clinical isolates of <i>Paenibacillus thiaminolyticus</i>","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"U.S. National Library of Medicine; Penn State College of Medicine; National Institutes of Health; Pennsylvania State University; University of Pennsylvania","keywords":"Virulence; Microbiology; Pilus; Biology; Hydrocephalus; Pathogen; Virulence factor; Gene; Outbreak; Fimbria; Genetics; Medicine; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001217398,0.0003608382,0.0002767348,0.0003108324,0.0002291448,0.0004667878,0.0001721316,0.0003035745,0.0005456835],"category_scores_gemma":[0.0004729475,0.0001567897,0.0003302972,0.0004099923,0.0001918948,0.000190634,0.0003060003,0.0005151387,0.0002286405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001631956,"about_ca_system_score_gemma":0.0002353428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001878919,"about_ca_topic_score_gemma":0.00130212,"domain_scores_codex":[0.999711,0.00003263003,0.000042632,0.00005798343,0.00009472747,0.00006095946],"domain_scores_gemma":[0.9997497,0.00003815298,0.0001016577,0.00002139474,0.00005209053,0.0000369792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001202439,0.00004297481,0.006612275,0.00008215119,0.0000168377,0.0004841465,0.00008795945,0.00006138808,0.9909611,0.00003548333,0.0001272397,0.001368172],"study_design_scores_gemma":[0.00002359146,0.0008894721,0.2779816,0.00006004387,0.0001704251,0.01144099,0.001250894,0.001738986,0.7006718,0.0001403266,0.005596098,0.00003581193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979026,0.0001961133,0.000656707,0.00009660027,0.00001466696,0.00002515469,0.000620707,0.00002590146,0.0004615671],"genre_scores_gemma":[0.995317,0.0001673983,0.001906139,0.00007045311,0.00001270613,0.00002160231,0.00204582,0.00001530487,0.0004436146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001878919,"threshold_uncertainty_score":0.00373596,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03064804991603274,"score_gpt":0.3093441975232844,"score_spread":0.2786961476072516,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}