{"id":"W4210268119","doi":"10.1094/pdis-11-21-2498-sc","title":"Whole-Genome Resources and Species-Level Taxonomic Validation of 89 Plant-Pathogenic <i>Xanthomonas</i> Strains Isolated from Various Host Plants","year":2022,"lang":"en","type":"article","venue":"Plant Disease","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Phylogenetics; Taxonomy (biology); Genus; Genome; Clade; Host (biology)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009014674,0.000720288,0.0008489952,0.001824873,0.001139129,0.001046091,0.0005583716,0.0004945559,0.001344805],"category_scores_gemma":[0.00184494,0.0003009186,0.000929869,0.003121797,0.0003465973,0.0005411996,0.0009980496,0.0006645226,0.00107331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006819025,"about_ca_system_score_gemma":0.001791907,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01697304,"about_ca_topic_score_gemma":0.02318253,"domain_scores_codex":[0.9991836,0.00007021396,0.0001093965,0.0002969778,0.0002000024,0.0001398101],"domain_scores_gemma":[0.9988163,0.0001808733,0.0002670257,0.0001574438,0.0004370578,0.0001413433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008373727,0.0002159751,0.06469671,0.001351414,0.0002907701,0.0007039788,0.001664178,0.000926941,0.9007871,0.0003056896,0.002564019,0.02565586],"study_design_scores_gemma":[0.00009641711,0.0006850994,0.8135002,0.0004042395,0.0006593156,0.001665719,0.002171785,0.003341305,0.1193401,0.0002592633,0.05776027,0.0001163604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9204481,0.001139933,0.003902543,0.000137855,0.00004542551,0.0001765329,0.07166248,0.000255731,0.002231371],"genre_scores_gemma":[0.4988935,0.001804458,0.0342587,0.0002584637,0.00003112666,0.0003766597,0.4621359,0.0003307719,0.001910455],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01697304,"threshold_uncertainty_score":0.03374851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03207684902320282,"score_gpt":0.1863695022296078,"score_spread":0.154292653206405,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}