{"id":"W4210425469","doi":"10.1093/bioinformatics/btac037","title":"GenomeTornadoPlot: a novel R package for CNV visualization and focality analysis","year":2022,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Deutschen Konsortium für Translationale Krebsforschung; Deutsche Forschungsgemeinschaft","keywords":"R package; Visualization; Computer science; Parallel computing; Computational science; Artificial intelligence","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002145565,0.00008842035,0.0001167904,0.00008077242,0.0002800202,0.00003696245,0.00009854831,0.00003827002,0.00003352928],"category_scores_gemma":[0.00002874049,0.00009030499,0.00008960933,0.0001914379,0.00002539361,0.000006670245,0.0001549065,0.00002912857,9.84004e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002313154,"about_ca_system_score_gemma":0.00004509311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001431865,"about_ca_topic_score_gemma":0.00001506354,"domain_scores_codex":[0.9993898,0.00001565469,0.0002444201,0.0001117482,0.00009666574,0.0001416547],"domain_scores_gemma":[0.9995877,0.0000104321,0.0001143164,0.0001910808,0.00005070811,0.00004583402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00147652,0.002857133,0.1337851,0.002533613,0.01716613,0.000004583506,0.03922795,0.02830821,0.4644195,0.2695311,0.02460121,0.01608896],"study_design_scores_gemma":[0.006021969,0.002650328,0.06493795,0.000009317255,0.002854405,0.00009525245,0.0224263,0.234395,0.03520607,0.001131692,0.6281319,0.002139848],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.591713,0.0001432089,0.406418,0.00005378991,0.000085943,0.000280147,0.0008421245,0.00001564816,0.0004481555],"genre_scores_gemma":[0.9906005,0.00002569727,0.007326847,0.0002675336,0.00005501298,0.00008347163,0.001246204,0.00001001059,0.000384686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6035307,"threshold_uncertainty_score":0.3682531,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01409801194283187,"score_gpt":0.2423413073685439,"score_spread":0.228243295425712,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}