{"id":"W4210425469","doi":"10.1093/bioinformatics/btac037","title":"GenomeTornadoPlot: a novel R package for CNV visualization and focality analysis","year":2022,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Deutschen Konsortium für Translationale Krebsforschung; Deutsche Forschungsgemeinschaft","keywords":"R package; Visualization; Computer science; Parallel computing; Computational science; Artificial intelligence","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004477801,0.003844389,0.002539638,0.003095078,0.0008222164,0.003705034,0.004332964,0.00140259,0.06638652],"category_scores_gemma":[0.02194951,0.002203897,0.003344631,0.002348427,0.0009258647,0.002502549,0.005021796,0.003815627,0.03842299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008480133,"about_ca_system_score_gemma":0.002921132,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004247655,"about_ca_topic_score_gemma":0.004330353,"domain_scores_codex":[0.997447,0.000760115,0.0002424914,0.0007683845,0.0005732899,0.0002087966],"domain_scores_gemma":[0.9931676,0.004304264,0.0006961429,0.0009240381,0.0006200741,0.0002879103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001436521,0.0000944757,0.008768176,0.004697543,0.002014814,0.0009673195,0.0008142354,0.01125901,0.007791307,0.01464949,0.8428431,0.1046641],"study_design_scores_gemma":[0.001358162,0.0002353193,0.01200319,0.0008823368,0.0009118318,0.001729472,0.0002360438,0.08910324,0.01930848,0.06454785,0.8091218,0.0005622864],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004343575,0.001241011,0.2619965,0.0007687797,0.0004186665,0.0003911186,0.1126629,0.6135947,0.004582772],"genre_scores_gemma":[0.05064531,0.001322243,0.3824702,0.001634408,0.0002695779,0.003680702,0.1701888,0.3817861,0.008002698],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.06638652,"threshold_uncertainty_score":0.2220851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01409801194283187,"score_gpt":0.2423413073685439,"score_spread":0.228243295425712,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}