{"id":"W4210556538","doi":"10.1093/gbe/evab047","title":"Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes","year":2021,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; University of Alberta","keywords":"Biology; Lichen; Genome; Symbiosis; Thallus; Gene; Fungus; Ascomycota; Marine fungi; Botany; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000186772,0.0001777079,0.0003830756,0.00002347978,0.0001817857,0.00001773071,0.0001770652,0.0003392056,0.0004340021],"category_scores_gemma":[0.00009612198,0.00008463272,0.00009467572,0.0004140951,0.00006941267,0.0000685212,0.0001909384,0.0001215289,0.00004279343],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005614436,"about_ca_system_score_gemma":0.0000306901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000360564,"about_ca_topic_score_gemma":0.0008090051,"domain_scores_codex":[0.9985541,0.0002159796,0.0003237259,0.0004885492,0.00007852713,0.0003391358],"domain_scores_gemma":[0.9993357,0.0001178244,0.0001110647,0.00009702081,0.0001733976,0.0001649678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007225006,0.00007407133,0.176463,0.000004477434,0.0001069717,0.00000303673,0.0002045686,0.000001189454,0.820178,0.0006000834,0.00008650823,0.00220581],"study_design_scores_gemma":[0.0002593782,0.0003471145,0.9833319,0.00000696176,0.00006883938,0.00000944126,0.0003127466,0.0000157026,0.007377626,0.001552152,0.006525501,0.000192628],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927782,0.004525763,0.00003705128,0.00131474,0.0002375622,0.0002115116,0.0004524407,0.00005192534,0.0003908495],"genre_scores_gemma":[0.9979829,0.0002177127,0.0003196338,0.0003606153,0.0002644093,0.00002726953,0.0005692737,0.000001503579,0.0002566383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8128004,"threshold_uncertainty_score":0.4752018,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01147386332632303,"score_gpt":0.2129515667282639,"score_spread":0.2014777034019409,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}