{"id":"W4210632912","doi":"10.3390/microorganisms10020369","title":"Application of a High-Throughput Targeted Sequence AmpliSeq Procedure to Assess the Presence and Variants of Virulence Genes in Salmonella","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université Laval; McGill University; Canadian Food Inspection Agency","funders":"Genome Canada","keywords":"Virulence; Salmonella; Serotype; Biology; Amplicon; Pathogenicity island; Microbiology; Gene; Population; Virology; Genetics; Polymerase chain reaction; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008297418,0.0006533123,0.0004297325,0.0007674115,0.0002418926,0.0004737847,0.000392881,0.0005416721,0.0004584542],"category_scores_gemma":[0.00135701,0.0003345885,0.0005699057,0.0003147283,0.0004339952,0.0002643823,0.0004333245,0.0006244518,0.000415142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003003617,"about_ca_system_score_gemma":0.0003769759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001925107,"about_ca_topic_score_gemma":0.003268234,"domain_scores_codex":[0.9991442,0.0001898528,0.00004877572,0.0002352089,0.0003055419,0.00007633253],"domain_scores_gemma":[0.9992896,0.0002967499,0.0001533941,0.00008102687,0.0001285304,0.00005054204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003349603,0.00002801761,0.001042095,0.00003281143,0.00001465538,0.00001777997,0.00003661092,0.0003435126,0.9949491,0.00004090293,0.00002659874,0.003434427],"study_design_scores_gemma":[0.00002091502,0.0006941291,0.02252433,0.00001850457,0.00008761251,0.0004438913,0.00008078697,0.01412021,0.9599174,0.0001193709,0.001939384,0.00003327366],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7451977,0.0008237049,0.2500987,0.0001474438,0.00003552602,0.0003604047,0.001450249,0.0006257453,0.001260453],"genre_scores_gemma":[0.6754194,0.000898169,0.3175013,0.0002508602,0.00001830311,0.0004073915,0.003347574,0.0001328781,0.002024195],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001925107,"threshold_uncertainty_score":0.004388154,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03174453072787016,"score_gpt":0.2523099158185323,"score_spread":0.2205653850906622,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}