{"id":"W4210640291","doi":"10.1101/2022.02.03.479050","title":"Monotreme-specific conserved proteins derived from retroviral reverse transcriptase","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Platypus; Monotreme; Biology; Endogenous retrovirus; Gene; Genome; Phylogenetic tree; Intron; Genetics; Reverse transcriptase; Bilateria; Evolutionary biology; Pseudogene; Phylogenetics; Retrotransposon; RNA; Zoology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001143103,0.0003648243,0.0001758586,0.00043177,0.0001607977,0.000359944,0.0001609336,0.0002769241,0.001592451],"category_scores_gemma":[0.0001520675,0.0001220623,0.000348098,0.0002707232,0.0002180147,0.0001354895,0.0002460726,0.0005285743,0.0007421043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002252902,"about_ca_system_score_gemma":0.0001975661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003093813,"about_ca_topic_score_gemma":0.0006859416,"domain_scores_codex":[0.9999014,0.000009417236,0.000007935872,0.000032534,0.00002845861,0.00002010868],"domain_scores_gemma":[0.9998798,0.00003168458,0.00004548478,0.00001415863,0.000008946308,0.00001980499],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004401492,0.000004058196,0.0006847084,0.00002792872,0.00000432048,0.0001090637,0.00001366157,0.0000250192,0.9976436,0.0001172336,0.00003237095,0.001294029],"study_design_scores_gemma":[0.00002541299,0.0001702655,0.04955645,0.00002702767,0.00004980725,0.002547825,0.0001020154,0.001225043,0.9322241,0.0003042121,0.01375456,0.00001331762],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9873199,0.001158269,0.006973485,0.00005703089,0.00004270891,0.00005151992,0.002036414,0.0001851009,0.00217552],"genre_scores_gemma":[0.9703917,0.00078058,0.01321477,0.0001196391,0.00002373176,0.00004587688,0.009950772,0.000102862,0.005370028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001592451,"threshold_uncertainty_score":0.005327284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02637273927709413,"score_gpt":0.1955901416380297,"score_spread":0.1692174023609355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}