{"id":"W4210816031","doi":"10.3390/genes13020263","title":"Snapshot of Mycobacterium tuberculosis Phylogenetics from an Indian State of Arunachal Pradesh Bordering China","year":2022,"lang":"en","type":"article","venue":"Genes","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"rpoB; Mycobacterium tuberculosis; Biology; Tuberculosis; Drug resistance; Phylogenetic tree; Genotype; Transmission (telecommunications); Contact tracing; Virology; Microbiology; Genetics; Veterinary medicine; Gene; Medicine; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003666409,0.0001464595,0.000492548,0.0001761774,0.00008042612,0.000003967883,0.0001904776,0.00005359263,0.0006271908],"category_scores_gemma":[0.0001092285,0.0001383634,0.000112978,0.0002316294,0.0001133676,0.00003796893,0.000214728,0.000241383,0.000002142513],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004656722,"about_ca_system_score_gemma":0.0001201282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002739443,"about_ca_topic_score_gemma":0.0002648213,"domain_scores_codex":[0.9982936,0.0002716627,0.0004329887,0.0002976911,0.000328323,0.000375681],"domain_scores_gemma":[0.9990581,0.00008324884,0.0001459347,0.0004430308,0.0000670013,0.0002026536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003578907,0.0003523084,0.4156461,0.0001644847,0.0003187525,0.00004147389,0.001651695,0.0008294446,0.5449444,0.00001907069,0.0003598258,0.03531456],"study_design_scores_gemma":[0.0007181002,0.00134091,0.8923843,0.00001899593,0.00006883168,0.00003027244,0.0004403624,0.0007223669,0.1003946,0.0002423729,0.003496032,0.0001428343],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961175,0.001805597,0.0000227826,0.0009956519,0.0001452182,0.0002399776,0.0004520098,0.00001648156,0.0002047406],"genre_scores_gemma":[0.9972004,0.0008027124,0.001013031,0.0002298509,0.000125752,0.00004012162,0.000535208,0.00002613818,0.00002681209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4767382,"threshold_uncertainty_score":0.68673,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0206377630101865,"score_gpt":0.3069384893539951,"score_spread":0.2863007263438086,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}