{"id":"W4211006516","doi":"10.1101/2022.02.08.479627","title":"Reference nodule transcriptomes for <i>Melilotus officinalis</i> and <i>Medicago sativa</i> cv. Algonquin","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Compute Canada","keywords":"Biology; Rhizobia; Botany; Symbiosis; Sinorhizobium meliloti; Medicago; Transcriptome; Medicago sativa; Melilotus; Biochemistry; Genetics; Gene; Bacteria; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002624407,0.0007413956,0.0006109306,0.001214869,0.0005736877,0.000616099,0.0004206276,0.000349737,0.001571431],"category_scores_gemma":[0.0005555855,0.0002876713,0.0009367955,0.001241044,0.0001839709,0.0003167783,0.0005336407,0.0003539898,0.000889148],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006101313,"about_ca_system_score_gemma":0.0004608767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004144437,"about_ca_topic_score_gemma":0.006352286,"domain_scores_codex":[0.9997101,0.0000194661,0.00002333892,0.0001424866,0.00005815995,0.00004635199],"domain_scores_gemma":[0.9996358,0.000071092,0.0001156227,0.00004423631,0.00008492653,0.00004833267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002645658,0.0000138871,0.003123285,0.0004252579,0.00004823765,0.0001155378,0.000248128,0.0003308753,0.9902568,0.0000885516,0.000349032,0.004735861],"study_design_scores_gemma":[0.0001176996,0.0007030187,0.5998991,0.000343982,0.0008221657,0.002288731,0.001158679,0.01197796,0.3115924,0.0006773856,0.07026026,0.0001586508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8920783,0.002803723,0.01260924,0.00009998483,0.00007268372,0.0001529894,0.08786546,0.00125673,0.003060858],"genre_scores_gemma":[0.6398155,0.001285273,0.02307681,0.0001475048,0.00003451977,0.0003312114,0.3299124,0.000817924,0.004578838],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004144437,"threshold_uncertainty_score":0.00824064,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02047579897551136,"score_gpt":0.2169391336367321,"score_spread":0.1964633346612207,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}