{"id":"W4211013589","doi":"10.1002/mas.20297","title":"Subcellular phosphoproteomics","year":2010,"lang":"en","type":"review","venue":"Mass Spectrometry Reviews","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research","keywords":"Phosphoproteomics; Phosphorylation; Chemistry; Protein phosphorylation; Proteomics; Cell fractionation; Cell biology; Protein subcellular localization prediction; Biochemistry; Kinase; Protein kinase A; Computational biology; Biology; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005104301,0.001032803,0.003660392,0.0002265631,0.0001804054,0.0001117306,0.001453841,0.001123804,0.004506911],"category_scores_gemma":[0.0001505591,0.0008505658,0.001680226,0.0009374378,0.0001113549,0.00008346196,0.0002139298,0.002820002,0.001496631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003499713,"about_ca_system_score_gemma":0.0001440801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005519574,"about_ca_topic_score_gemma":0.000001370947,"domain_scores_codex":[0.9962718,0.00005164976,0.001636504,0.001098251,0.0002600989,0.0006816358],"domain_scores_gemma":[0.99564,0.00009557947,0.00142424,0.002554245,0.00004507543,0.0002408111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000001074798,0.00005101334,9.044302e-7,0.01818842,0.00003866267,0.000009260204,0.0000018649,1.405122e-8,0.002359645,0.003328105,0.0007710097,0.97525],"study_design_scores_gemma":[0.00006472053,0.00001215179,6.662783e-9,0.005354262,0.00049557,0.00007219362,8.454941e-7,0.000001563208,0.002926044,0.002590525,0.9876251,0.0008569806],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[4.970352e-7,0.9609442,0.01535832,0.0000222049,0.0001126881,0.001758029,0.0001445736,0.0003639437,0.0212955],"genre_scores_gemma":[4.75691e-8,0.7912918,0.2001836,0.00002448033,0.0005728582,0.002447593,0.0003993916,0.0001971361,0.004883099],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9868541,"threshold_uncertainty_score":0.9994805,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03900424058015013,"score_gpt":0.3302584987375838,"score_spread":0.2912542581574337,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}