{"id":"W4211018920","doi":"10.1080/22221751.2022.2040922","title":"Co-circulation of two SARS-CoV-2 variant strains within imported pet hamsters in Hong Kong","year":2022,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre","funders":"Health and Medical Research Fund; Food and Health Bureau; Lo Ying Shek Chi Wai Foundation","keywords":"Hamster; Outbreak; Virology; Transmission (telecommunications); Zoonosis; Biology; Phylogenetic tree; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Strain (injury); Pandemic; Veterinary medicine; Coronavirus disease 2019 (COVID-19); Medicine; Genetics; Gene; Infectious disease (medical specialty); Internal medicine; Molecular biology; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007483684,0.0001969557,0.0003407498,0.0008741298,0.0003419261,0.00002968887,0.0001356188,0.00004606391,0.00008487573],"category_scores_gemma":[0.0001112884,0.0002187716,0.0001749153,0.001279977,0.000111405,0.0001554769,0.00009181714,0.0006401298,0.00001689154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004058219,"about_ca_system_score_gemma":0.0004010854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004091586,"about_ca_topic_score_gemma":0.00136865,"domain_scores_codex":[0.9980583,0.0001805016,0.0005979253,0.0003861916,0.0003786494,0.0003984515],"domain_scores_gemma":[0.9992192,0.00007326694,0.0001886466,0.0003821743,0.0001084044,0.00002830246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003917755,0.0004407166,0.1705946,0.00006597389,0.000106791,0.0001523667,0.001821035,0.0006814056,0.8251589,0.0003293074,0.0003406416,0.0002690872],"study_design_scores_gemma":[0.01025185,0.0009099994,0.1529601,0.0003929946,0.0003456342,0.002871008,0.003939185,0.01748397,0.7794516,0.0007697372,0.02962207,0.001001809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995056,0.00009005709,0.00136163,0.00029762,0.0003667583,0.0005406616,0.00004159602,0.0001180297,0.002127666],"genre_scores_gemma":[0.9970102,0.000002639821,0.0002075453,0.002503635,0.00007730135,0.00008172669,0.0000486967,0.00004309393,0.00002518839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04570732,"threshold_uncertainty_score":0.8921248,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03510849176451924,"score_gpt":0.353738089393087,"score_spread":0.3186295976285678,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}