{"id":"W4211046815","doi":"10.3390/v14020361","title":"Monocyte Gene and Molecular Expression Profiles Suggest Distinct Effector and Regulatory Functions in Beninese HIV Highly Exposed Seronegative Female Commercial Sex Workers","year":2022,"lang":"en","type":"article","venue":"Viruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université du Québec à Montréal; Hôpital Maisonneuve-Rosemont; Université Laval; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"CD14; CD11c; Biology; CD163; Immunology; Monocyte; Population; Effector; Myeloid; Transcriptome; IRF8; Immune system; Gene expression; Gene; Medicine; Genetics; Phenotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001388369,0.0001626141,0.0002158205,0.000125462,0.0004141958,0.00001617673,0.00007983836,0.0000697662,0.0002273647],"category_scores_gemma":[0.00003552633,0.0001385864,0.00002990921,0.000123855,0.000217404,0.00007609292,0.000249296,0.000235517,0.00005398916],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007006364,"about_ca_system_score_gemma":0.00004613964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001880739,"about_ca_topic_score_gemma":0.00005137063,"domain_scores_codex":[0.9987122,0.0004939674,0.0001504004,0.0003176884,0.0000552359,0.0002705363],"domain_scores_gemma":[0.9995147,0.0002061337,0.00005017717,0.0001683956,0.00001482483,0.00004579894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006574817,0.0001924556,0.4374883,0.00001555493,0.00008539985,0.00006076069,0.0004768343,0.00001248503,0.5579864,0.00001589953,0.001508169,0.00150018],"study_design_scores_gemma":[0.002829221,0.0004420989,0.5919038,0.00002658278,0.00002704826,0.00002198034,0.0007092443,0.000002159778,0.3991898,0.000008225656,0.004664655,0.0001751697],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949889,0.003662598,0.0000235533,0.00009078618,0.00009215082,0.0004768427,0.0005512959,0.00004242331,0.00007150257],"genre_scores_gemma":[0.9985323,0.00002109529,0.00006723262,0.00005417239,0.00001353325,0.0003729054,0.0003883093,0.00001717217,0.0005332718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1587966,"threshold_uncertainty_score":0.5651391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02020356366135463,"score_gpt":0.2588860022100109,"score_spread":0.2386824385486563,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}