{"id":"W4211073647","doi":"10.1371/journal.pone.0263496","title":"A large accessory genome and high recombination rates may influence global distribution and broad host range of the fungal plant pathogen Claviceps purpurea","year":2022,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant and fungal interactions","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Smithsonian Tropical Research Institute; Agricultural Research Service; Simons Foundation; American Malting Barley Association; U.S. Department of Agriculture; National Institute of Food and Agriculture; Smithsonian Institution","keywords":"Biology; Genome; Transposable element; Recombination; Genetics; Gene duplication; Organism; Gene; Genome evolution; Claviceps purpurea; Evolutionary biology; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001249756,0.00006928707,0.0001062564,0.000004575542,0.0003471162,0.00003730087,0.0001246963,0.00003418329,0.00008627724],"category_scores_gemma":[0.00003472782,0.00002908847,0.00002220876,0.000176753,0.0000324898,0.0001370578,0.0001641718,0.0001120938,0.000001812697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003295656,"about_ca_system_score_gemma":0.000003478782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002560417,"about_ca_topic_score_gemma":0.0003317367,"domain_scores_codex":[0.9993491,0.00008876043,0.0001219576,0.0001436158,0.000172349,0.0001242313],"domain_scores_gemma":[0.9997182,0.00007918571,0.00009343935,0.00003255872,0.00004120907,0.00003534864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009616715,0.0007137528,0.4037634,0.00001806587,0.00004044197,0.000002982719,0.000100773,8.689136e-7,0.5937617,0.0009708858,0.00008370777,0.0004473365],"study_design_scores_gemma":[0.0001806941,0.000117839,0.9963006,0.0000176761,0.00003612922,0.0000131827,0.0001670367,0.00004964593,0.002065423,0.0002036978,0.0007739611,0.00007411352],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888636,0.0002709845,3.034445e-7,0.00116017,0.00003472938,0.0001941716,0.009396402,0.00001629957,0.00006336159],"genre_scores_gemma":[0.9991515,0.0001141227,0.000004239731,0.00009329886,0.00003055081,0.00003063795,0.0005027439,4.029406e-7,0.00007254392],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5925372,"threshold_uncertainty_score":0.2669773,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02582861602410454,"score_gpt":0.2163550236861893,"score_spread":0.1905264076620848,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}