{"id":"W4211141369","doi":"10.1007/s00705-020-04577-8","title":"Taxonomy of prokaryotic viruses: 2018-2019update from the ICTV Bacterial and Archaeal Viruses Subcommittee","year":2020,"lang":"en","type":"article","venue":"Archives of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":201,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; National Science Foundation of Sri Lanka; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Academy of Finland","keywords":"Biology; Virus classification; Virology; Taxonomy (biology); Computational biology; Genetics; Genome; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003862787,0.0001207473,0.0002254232,0.00001626651,0.00006550195,0.000009166535,0.0003244625,0.00003915256,0.001789229],"category_scores_gemma":[0.00003376009,0.00008975026,0.00006708385,0.00004699481,0.0009445492,0.0001045923,0.0004805104,0.0001429315,0.00008833921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004548704,"about_ca_system_score_gemma":0.00000920499,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001960543,"about_ca_topic_score_gemma":0.0005935077,"domain_scores_codex":[0.999133,0.0001283835,0.000269089,0.0002425931,0.00005206103,0.0001748659],"domain_scores_gemma":[0.9991578,0.0003928415,0.0001601505,0.0002141969,0.000001854187,0.00007314795],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003210891,0.00005435011,0.0181338,0.000007258839,0.00004219544,0.000001422176,0.00153921,0.00001350042,0.9749081,0.00005483291,0.001107698,0.003816543],"study_design_scores_gemma":[0.0007715881,0.0005707197,0.8032531,0.00001583366,0.0000809448,0.000009372328,0.000175493,0.0001655426,0.05982719,0.0004429356,0.1345146,0.0001726582],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963323,0.00005605294,0.0003236362,0.001435049,0.0001276918,0.0002407342,0.0002020411,0.000009513292,0.001272959],"genre_scores_gemma":[0.9964226,0.00006709441,0.001644211,0.001710424,0.0000931977,0.00001500574,0.00001370563,0.00001090288,0.00002278483],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9150809,"threshold_uncertainty_score":0.9991233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0299426133296044,"score_gpt":0.2298209966220519,"score_spread":0.1998783832924474,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}