{"id":"W4211168216","doi":"10.1128/9781555819217.ch47","title":"Mammalian Endogenous Retroviruses","year":2015,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Retrotransposon; Endogenous retrovirus; Long terminal repeat; Biology; Retrovirus; Genome; Genetics; Inheritance (genetic algorithm); Transposable element; Retroposon; Evolutionary biology; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000830848,0.0002756662,0.0002679177,0.000009122538,0.0001440223,0.00007045441,0.0003536177,0.0003223446,0.0008714075],"category_scores_gemma":[0.00001344028,0.000110515,0.0001543555,0.000005640638,0.00007186244,0.00002193453,0.00016707,0.0002077218,0.000212307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003163219,"about_ca_system_score_gemma":0.00002317756,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005344052,"about_ca_topic_score_gemma":0.000565971,"domain_scores_codex":[0.9987886,0.00002098554,0.0002474414,0.0003772007,0.0003128693,0.0002529026],"domain_scores_gemma":[0.999368,0.00006593284,0.0001498941,0.0001315863,0.0001111278,0.0001734768],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000770484,0.00007235118,0.0000482244,0.00004330441,0.0002572133,0.0002115312,0.0004380367,0.000004063307,0.06412548,0.5849168,0.02429742,0.3255086],"study_design_scores_gemma":[0.00008338506,0.0001766135,0.00008279912,0.00002855738,0.00005642883,0.00003254573,0.000004342317,7.725754e-7,0.00126883,0.01935739,0.9785991,0.0003092467],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.0008898675,0.0008672056,2.859055e-7,0.00007448973,0.0002536541,0.000273409,0.0003987626,0.0001107889,0.9971315],"genre_scores_gemma":[0.05128697,0.000041303,0.00004628457,0.0001234298,0.001030265,0.00002296065,0.0001523613,0.00000451973,0.9472919],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.9543017,"threshold_uncertainty_score":0.9541301,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1347107387517908,"score_gpt":0.2374018518357593,"score_spread":0.1026911130839686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}