{"id":"W4211195189","doi":"10.3390/molecules27031137","title":"Evaluation of Fast and Sensitive Proteome Profiling of FF and FFPE Kidney Patient Tissues","year":2022,"lang":"en","type":"article","venue":"Molecules","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Nierstichting","keywords":"Proteome; Repeatability; Chemistry; Proteomics; Molecular biology; Chromatography; Computational biology; Biology; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001413161,0.00005897684,0.00009254417,0.00002354146,0.00006241383,0.000003411557,0.00003251608,0.00002013003,0.00002932074],"category_scores_gemma":[0.00005041555,0.0000604042,0.00001354159,0.00004905799,0.00005134626,0.00001988509,0.0001070373,0.00006445037,7.837393e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002421285,"about_ca_system_score_gemma":0.00003385477,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001690667,"about_ca_topic_score_gemma":4.337268e-7,"domain_scores_codex":[0.9994304,0.00002584776,0.0001360743,0.0001363669,0.0002135232,0.00005779948],"domain_scores_gemma":[0.9995992,0.00001174941,0.00012447,0.0001113858,0.0001262791,0.0000269504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001159757,0.00003276663,0.0001510732,0.00006086922,0.00001142581,4.362886e-7,0.000426396,0.0001241499,0.9828331,0.000872881,0.000009308865,0.01546602],"study_design_scores_gemma":[0.0001448411,0.00004774215,0.00003745195,0.00002474049,0.0000291616,0.000004841975,0.0005672137,0.004416139,0.9907176,0.003791392,0.0001587081,0.0000601224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943443,0.0001776553,0.003596422,0.00008342872,0.000003215253,0.0003764131,0.0001485701,0.00001915988,0.001250837],"genre_scores_gemma":[0.9688395,0.00001696842,0.03075083,0.00001457192,0.000004806215,0.0003114027,0.00003545957,0.000008589838,0.00001790458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02715441,"threshold_uncertainty_score":0.2463212,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01401895218400547,"score_gpt":0.2777205271603421,"score_spread":0.2637015749763367,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}