{"id":"W4211205096","doi":"10.3390/jof8020167","title":"Haplotype-Resolved Genome Analyses Reveal Genetically Distinct Nuclei within a Commercial Cultivar of Lentinula edodes","year":2022,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Beijing Academy of Agricultural and Forestry Sciences","keywords":"Biology; Ploidy; Genome; Lentinula; Synteny; Mating type; Genetics; Mating; Strain (injury); Botany; Gene; Mushroom","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004069982,0.000117773,0.0003113917,0.00004081233,0.0002575829,0.00003266611,0.0003651675,0.00003970654,0.006085812],"category_scores_gemma":[0.0001415224,0.00004943733,0.0002785393,0.0002882781,0.00001692934,0.00008668264,0.0001131256,0.0003230931,0.00002609628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003202194,"about_ca_system_score_gemma":0.00002342986,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001552055,"about_ca_topic_score_gemma":0.00006410197,"domain_scores_codex":[0.9985023,0.000202474,0.0005929628,0.0001232374,0.0004004669,0.0001786303],"domain_scores_gemma":[0.9984651,0.0007016875,0.00051378,0.00005227814,0.0001519028,0.0001152201],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005042418,0.0003009045,0.03273542,0.000008847984,0.0001197733,0.00004987722,0.0002018862,0.0002540712,0.9500728,0.0002067973,0.007067109,0.008478246],"study_design_scores_gemma":[0.0006347976,0.005485103,0.6630893,0.0001985394,0.0006857425,0.001493813,0.002206686,0.001221016,0.01711872,0.001788214,0.3052125,0.0008655071],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954767,0.001495222,0.00004219636,0.0004141907,0.0004448878,0.00008248481,0.0008200875,0.00001042905,0.001213845],"genre_scores_gemma":[0.9981421,0.0001509793,0.0007115367,0.0001239767,0.0004550115,0.00000224396,0.0001072091,0.000001701203,0.0003052225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9329541,"threshold_uncertainty_score":0.9948227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03798985641209026,"score_gpt":0.2713829192211848,"score_spread":0.2333930628090945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}